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SCNpilot_expt_1000_bf_scaffold_945

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_945_1
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..111)
DNA (111bp) protein (37aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
tal; transaldolase B; K00616 transaldolase [EC:2.2.1.2]
Transaldolase n=4 Tax=Xanthomonas campestris RepID=TAL_XANC8
SCNpilot_expt_1000_bf_scaffold_945_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125..1318)
DNA (1194bp) protein (398aa)
formyl-CoA transferase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003662A92 rbh
putative acyl-CoA transferase
Putative acyl-CoA transferase {ECO:0000313|EMBL:AGU51094.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_945_3
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1432..3291)
DNA (1860bp) protein (620aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037CC429 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHX15783.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_945_4
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3288..5477)
DNA (2190bp) protein (730aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV42_9GAMM rbh
Sulfatase-modifying factor protein {ECO:0000313|EMBL:AHX15784.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_945_5
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5507..6448)
DNA (942bp) protein (314aa)
Ribokinase (EC:2.7.1.15); K00852 ribokinase [EC:2.7.1.15]
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YBA2_9BURK rbh
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_1000_bf_scaffold_945_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6445..7650)
DNA (1206bp) protein (402aa)
Beta-lactamase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV41_9GAMM rbh
Beta-lactamase {ECO:0000313|EMBL:EIM03333.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
beta-lactamase
SCNpilot_expt_1000_bf_scaffold_945_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7953..10145)
DNA (2193bp) protein (731aa)
Putative TonB-dependent receptor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV40_9GAMM rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:EIM03332.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_945_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10416..11297)
DNA (882bp) protein (294aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV39_9GAMM
LysR family transcriptional regulator {ECO:0000313|EMBL:EIM03331.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_945_9
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11383..13809)
DNA (2427bp) protein (809aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000364E3A2 rbh
putative sodium/solute symporter rbh
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_1000_bf_scaffold_945_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13836..14702)
DNA (867bp) protein (289aa)
CitryL-CoA lyase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WV37_9GAMM rbh
CitryL-CoA lyase {ECO:0000313|EMBL:EIM03329.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
aldolase/citrate lyase family protein
SCNpilot_expt_1000_bf_scaffold_945_11
unknown

Not on your lists

comp(15404..15592)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_945_12
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16197..17033
DNA (837bp) protein (279aa)
Uncharacterized protein {ECO:0000313|EMBL:AJY48463.1}; TaxID=470 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii.;"
SCNpilot_expt_1000_bf_scaffold_945_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17286..17687)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. AKL6 RepID=UPI00035CF476
Uncharacterized protein {ECO:0000313|EMBL:KDE90585.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_945_14
unknown

Not on your lists

comp(17725..18045)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_945_15
unknown

Not on your lists

comp(18042..18257)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_945_16
unknown

Not on your lists

comp(18359..18799)
DNA (441bp) protein (147aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_945_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19473..20741)
DNA (1269bp) protein (423aa)
Integrase n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KMN8_STEMA
Integrase
Integrase {ECO:0000313|EMBL:CCH12327.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
SCNpilot_expt_1000_bf_scaffold_945_18
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21653..22798
DNA (1146bp) protein (382aa)
integrase, partial n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B39A65 rbh
Uncharacterized protein {ECO:0000313|EMBL:EWC53081.1}; TaxID=1401257 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. glycines str. 8ra.;"
integrase family protein
SCNpilot_expt_1000_bf_scaffold_945_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22861..23199)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4W9T4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96225.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_945_20
unknown

Not on your lists

comp(24239..24316)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 20 items

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