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SCNpilot_expt_1000_bf_scaffold_189

Search features with annotation key words

Displaying items 1-30 of 586 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_189_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1531)
DNA (1530bp) protein (510aa)
ribonucleoside-diphosphate reductase 2 alpha chain; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Coenzyme B12-dependent class II ribonucleotide reductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QNM8_9BRAD
Vitamin B12-dependent ribonucleotide reductase {ECO:0000313|EMBL:KFC70336.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_189_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1479..2123)
DNA (645bp) protein (215aa)
nrd; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, large subunit (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZR3_9RHIZ
Vitamin B12-dependent ribonucleotide reductase {ECO:0000313|EMBL:KFC70336.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_189_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2889..3299
DNA (411bp) protein (137aa)
NADH dehydrogenase; K00356 NADH dehydrogenase [EC:1.6.99.3]
NADH-ubiquinone oxidoreductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000316460B
NADH:ubiquinone oxidoreductase 17.2 kD subunit {ECO:0000313|EMBL:KFC70335.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_189_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3472..4092
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003818B33
Uncharacterized protein {ECO:0000313|EMBL:KFC70332.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_189_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4370..5335
DNA (966bp) protein (322aa)
Peptide chain release factor 2 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT0_9RHIZ rbh
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K02836 peptide chain release factor 2
SCNpilot_expt_1000_bf_scaffold_189_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5405..6724)
DNA (1320bp) protein (440aa)
Putative metalloendopeptidase {ECO:0000313|EMBL:KFC68931.1}; EC=3.4.24.- {ECO:0000313|EMBL:KFC68931.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Metalloendopeptidase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z8I0_9BRAD
metalloendopeptidase
SCNpilot_expt_1000_bf_scaffold_189_7
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

6846..7430
DNA (585bp) protein (195aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ72219.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_1000_bf_scaffold_189_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7602..11054
DNA (3453bp) protein (1151aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC68929.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_189_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11085..12422)
DNA (1338bp) protein (446aa)
tyrS; tyrosine-tRNA ligase TyrS (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine-tRNA ligase TyrS {ECO:0000313|EMBL:AEI06737.1}; EC=6.1.1.1 {ECO:0000313|EMBL:AEI06737.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Tyrosine--tRNA ligase n=2 Tax=Oligotropha carboxidovorans RepID=B6JHE4_OLICO
SCNpilot_expt_1000_bf_scaffold_189_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12474..13145)
DNA (672bp) protein (224aa)
alpha/beta hydrolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FFAF32 rbh
Putative hydrolase of the alpha/beta superfamily protein {ECO:0000313|EMBL:KFC68927.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07018 rbh
SCNpilot_expt_1000_bf_scaffold_189_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13440..14642
DNA (1203bp) protein (401aa)
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7] rbh
Cysteine desulfurase family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZT7_9RHIZ rbh
Cysteine desulfurase {ECO:0000313|EMBL:KFC68926.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_189_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14703..15476
DNA (774bp) protein (258aa)
FeS assembly protein SufB n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CQJ3_9RHOB
Cysteine desulfurase activator complex subunit SufB {ECO:0000313|EMBL:KFC68925.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cysteine desulfurase activator complex subunit SufB; K09014 Fe-S cluster assembly protein SufB
SCNpilot_expt_1000_bf_scaffold_189_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15464..16153
DNA (690bp) protein (230aa)
cysteine desulfarase n=1 Tax=Methylopila sp. M107 RepID=UPI00037C7908
Cysteine desulfurase activator complex subunit SufB {ECO:0000313|EMBL:KFC68925.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB
SCNpilot_expt_1000_bf_scaffold_189_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16266..17018
DNA (753bp) protein (251aa)
transporter n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003705216 rbh
FeS assembly ATPase SufC {ECO:0000313|EMBL:KFC68924.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_189_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17018..18367
DNA (1350bp) protein (450aa)
FeS assembly protein SufD n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IBN7_BEII9 rbh
FeS assembly protein SufD {ECO:0000313|EMBL:KFC68923.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD rbh
SCNpilot_expt_1000_bf_scaffold_189_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19077..19781
DNA (705bp) protein (235aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
cysteine desulfurase n=1 Tax=Methylobacterium sp. 77 RepID=UPI000367D099
SCNpilot_expt_1000_bf_scaffold_189_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19836..20174
DNA (339bp) protein (113aa)
FeS assembly SUF system protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IRX2_METNO
Uncharacterized protein {ECO:0000313|EMBL:KFC68920.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FeS assembly SUF system protein
SCNpilot_expt_1000_bf_scaffold_189_18
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20284..21078)
DNA (795bp) protein (265aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Acidovorax sp. CF316 RepID=J1ECW3_9BURK rbh
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46241.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_189_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21232..21744
DNA (513bp) protein (171aa)
Free methionine-R-sulfoxide reductase {ECO:0000313|EMBL:KFC75359.1}; EC=1.8.4.14 {ECO:0000313|EMBL:KFC75359.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GAF domain-containing protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T125_9RHIZ
hypothetical protein; K07170 GAF domain-containing protein
SCNpilot_expt_1000_bf_scaffold_189_20
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21755..22105
DNA (351bp) protein (117aa)
UPI0003D010C1 related cluster n=1 Tax=unknown RepID=UPI0003D010C1
putative transcriptional regulator, ModE family; K02019 molybdate transport system regulatory protein
ModE family transcriptional regulator {ECO:0000313|EMBL:ESZ23477.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_expt_1000_bf_scaffold_189_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22215..22493
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBL9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFC61597.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transglycosylase-associated protein
SCNpilot_expt_1000_bf_scaffold_189_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22591..23616
DNA (1026bp) protein (342aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
Lipoyl synthase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=LIPA_METPB rbh
SCNpilot_expt_1000_bf_scaffold_189_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23629..24102
DNA (474bp) protein (158aa)
Cyclase/dehydrase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y0N5_9RHIZ
Cyclase/dehydrase {ECO:0000313|EMBL:KFC61599.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cyclase/dehydrase
SCNpilot_expt_1000_bf_scaffold_189_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24107..24604)
DNA (498bp) protein (166aa)
CinA domain protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QHC3_BRESC
CinA protein {ECO:0000313|EMBL:KFC61600.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
damage inducible protein CinA; K03743
SCNpilot_expt_1000_bf_scaffold_189_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24607..25809)
DNA (1203bp) protein (401aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=ISPDF_AZOC5
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_189_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25988..26977
DNA (990bp) protein (330aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tRNA-dihydrouridine synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0L9_9RHIZ
NifR3 family TIM-barrel protein
SCNpilot_expt_1000_bf_scaffold_189_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26998..28131
DNA (1134bp) protein (378aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
nitrogen-specific signal transduction histidine kinase NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000308BCB3 rbh
SCNpilot_expt_1000_bf_scaffold_189_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28147..29598
DNA (1452bp) protein (484aa)
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IDE2_METNO rbh
Nitrogen assimilation regulatory protein {ECO:0000313|EMBL:KFC61604.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Fis family nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG rbh
SCNpilot_expt_1000_bf_scaffold_189_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29709..32027
DNA (2319bp) protein (773aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
multi-sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] rbh
Multi-sensor signal transduction histidine kinase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UIY1_METS4 rbh
SCNpilot_expt_1000_bf_scaffold_189_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32024..33391
DNA (1368bp) protein (456aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IDE6_METNO rbh
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:KFC61606.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Fis family two component sigma54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX rbh
Displaying items 1-30 of 586 in total

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