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SCNpilot_expt_1000_bf_scaffold_528

Search features with annotation key words

Displaying items 1-30 of 250 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_528_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16..333
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000378795B
Uncharacterized protein {ECO:0000313|EMBL:KFC73917.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_528_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

483..734
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P138_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35151.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_528_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(739..1164)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPM6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57319.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_528_4
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1164..1775)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000372FE55 rbh
Lysine transporter LysE {ECO:0000313|EMBL:KGM32374.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
lysine exporter protein LysE/YggA
SCNpilot_expt_1000_bf_scaffold_528_5
unknown

Not on your lists

comp(1775..2026)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_528_6
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2173..2361
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) RepID=D5ATA1_RHOCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE85208.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
SCNpilot_expt_1000_bf_scaffold_528_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2549..4549)
DNA (2001bp) protein (667aa)
RNA polymerase sigma factor RpoD n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E332BF rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
SCNpilot_expt_1000_bf_scaffold_528_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4749..6647)
DNA (1899bp) protein (633aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-] rbh
DNA primase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPQ1_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_528_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6868..7329)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DF2920
Uncharacterized protein {ECO:0000313|EMBL:KFC73921.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GatB/YqeY; K09117 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_528_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7497..8705
DNA (1209bp) protein (403aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
carbamoyl-phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] rbh
Carbamoyl-phosphate synthase small chain n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPP3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_528_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8724..9053
DNA (330bp) protein (110aa)
Bll5452 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89J32_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KFC73923.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_528_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9227..10042
DNA (816bp) protein (272aa)
Prephenate dehydrogenase {ECO:0000313|EMBL:KFC73924.1}; EC=1.3.1.12 {ECO:0000313|EMBL:KFC73924.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
prephenate dehydrogenase; K00210 prephenate dehydrogenase [EC:1.3.1.12]
Prephenate dehydrogenase n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2LU47_9PROT
SCNpilot_expt_1000_bf_scaffold_528_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10093..10518
DNA (426bp) protein (142aa)
preprotein translocase subunit TatC n=1 Tax=Afipia birgiae RepID=UPI0003159C75
Uncharacterized protein {ECO:0000313|EMBL:KFC73925.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K06886 hemoglobin
SCNpilot_expt_1000_bf_scaffold_528_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10519..11451)
DNA (933bp) protein (311aa)
LysR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKY8_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KFC73927.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_528_15
bacterium YEK0313, Bacteria

Not on your lists

11543..12451
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FKP3_9RHIZ
Putative amino-acid metabolite efflux pump {ECO:0000313|EMBL:CEJ12799.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative permease, DMT superfamily
SCNpilot_expt_1000_bf_scaffold_528_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12452..13705)
DNA (1254bp) protein (418aa)
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:KFC73930.1}; EC=2.1.1.79 {ECO:0000313|EMBL:KFC73930.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2C2_STAND rbh
SCNpilot_expt_1000_bf_scaffold_528_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13842..14534
DNA (693bp) protein (231aa)
Methyltransferase type 12 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0ULC5_METS4
Methyltransferase type 12 {ECO:0000313|EMBL:KFC73931.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
type 12 methyltransferase
SCNpilot_expt_1000_bf_scaffold_528_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14622..15458
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QB07_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF02130.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_1000_bf_scaffold_528_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15465..15932
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIP0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38223.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_528_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15958..16362)
DNA (405bp) protein (135aa)
Putative membrane protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPN6_9RHIZ
GtrA-like protein {ECO:0000313|EMBL:KFC73932.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GtrA family protein
SCNpilot_expt_1000_bf_scaffold_528_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16490..17551)
DNA (1062bp) protein (354aa)
Putative methyltransferase n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M6E6_RHIL3 rbh
CRP/FNR family transcriptional regulator, anaerobic regulatory protein {ECO:0000313|EMBL:KFC70964.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative methyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_528_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17672..18031)
DNA (360bp) protein (120aa)
Probable regulatory protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98I91_RHILO
Putative transcriptional regulator {ECO:0000313|EMBL:KFC73935.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
regulatory protein
SCNpilot_expt_1000_bf_scaffold_528_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18174..19349
DNA (1176bp) protein (392aa)
Major facilitator superfamily MFS_1 n=3 Tax=Ralstonia RepID=B2UD63_RALPJ
Putative integral membrane transporter protein {ECO:0000313|EMBL:KFC73936.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_528_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19493..20362
DNA (870bp) protein (290aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
carbamoyl phosphate synthase large subunit n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D68881
SCNpilot_expt_1000_bf_scaffold_528_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20359..22794
DNA (2436bp) protein (812aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPN4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_528_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22916..23374
DNA (459bp) protein (153aa)
Transcription elongation factor GreA n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPN3_9RHIZ
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_expt_1000_bf_scaffold_528_27
Rhodobacteraceae bacterium KLH11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23422..24033)
DNA (612bp) protein (204aa)
MarC family transcriptional regulator n=1 Tax=Ruegeria conchae RepID=UPI0002379693
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=467661 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium KLH11.;"
integral membrane protein, MarC family; K05595 multiple antibiotic resistance protein
SCNpilot_expt_1000_bf_scaffold_528_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24199..24714
DNA (516bp) protein (172aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC73939.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_528_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24722..25186)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000366D0E1
Transcriptional regulatory protein {ECO:0000313|EMBL:KFC73942.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_528_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25269..26258
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031521BD rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC73943.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07276 hypothetical protein rbh
Displaying items 1-30 of 250 in total

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