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SCNpilot_expt_1000_bf_scaffold_928

Search features with annotation key words

Displaying items 1-30 of 171 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_928_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..258
DNA (258bp) protein (86aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphate ABC transporter ATPase; K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Phosphate ABC transporter, ATPase subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IN46_METNO
SCNpilot_expt_1000_bf_scaffold_928_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

289..1008
DNA (720bp) protein (240aa)
Phosphate-specific transport system accessory protein PhoU n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IN45_METNO rbh
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
phosphate uptake regulator PhoU; K02039 phosphate transport system protein rbh
SCNpilot_expt_1000_bf_scaffold_928_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1020..1718
DNA (699bp) protein (233aa)
chemotaxis protein CheY n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EEE5C7 rbh
Phosphate regulon transcriptional regulatory protein phoB {ECO:0000313|EMBL:KFC70009.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB rbh
SCNpilot_expt_1000_bf_scaffold_928_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1724..2005)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QRJ0_METTR
Uncharacterized protein {ECO:0000313|EMBL:CDP50083.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_928_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2022..2408)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B8B9
Uncharacterized protein {ECO:0000313|EMBL:KFC72890.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_928_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2462..3373)
DNA (912bp) protein (304aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J3C6S6_9RHIZ
Putative Transcriptional Regulator, LysR family Gcv operon activator {ECO:0000313|EMBL:KFC69653.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_928_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3468..4883
DNA (1416bp) protein (472aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1] rbh
Argininosuccinate lyase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z1N3_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_928_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4880..5776
DNA (897bp) protein (299aa)
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V201_9RHIZ rbh
ABC transporter permease {ECO:0000313|EMBL:KFC69655.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_928_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5773..6567
DNA (795bp) protein (265aa)
arginine/ornithine transport ATP-binding protein (EC:3.6.1.3) rbh
ABC-type polar amino acid transport system, ATPase component n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HLX7_9RHIZ rbh
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:KFC69656.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_928_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6605..7435
DNA (831bp) protein (277aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VI24_9RHIZ rbh
Putative ABC transporter, substrate-binding protein {ECO:0000313|EMBL:KFC69657.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_928_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7609..8787
DNA (1179bp) protein (393aa)
Putative ATPase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YML1_9RHIZ rbh
Putative ATPase (YhcM) AFG1 family protein {ECO:0000313|EMBL:KFC63685.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
AFG1 family ATPase; K06916 rbh
SCNpilot_expt_1000_bf_scaffold_928_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8791..9390
DNA (600bp) protein (200aa)
Transcriptional regulator, TetR family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCE9_METS4
Putative Transcriptional regulatory protein, TetR family {ECO:0000313|EMBL:KFC63684.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_928_13
unknown

Not on your lists

comp(9913..10149)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_928_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10716..11354)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JWR6_HYPDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ25024.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_928_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11531..12727
DNA (1197bp) protein (399aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P288_9BRAD
SCNpilot_expt_1000_bf_scaffold_928_16
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(12949..13185)
DNA (237bp) protein (79aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY11964.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
transmembrane_regions 138..160 id=11767 bin=ACD17 species=ACD17 genus=ACD17 taxon_order=ACD17 taxon_class=ACD17 phylum=Clamydiae tax=ACD17 organism_group=Chlamydiae organism_desc=CvE6
SCNpilot_expt_1000_bf_scaffold_928_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13326..13595
DNA (270bp) protein (90aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
succinyl-CoA ligase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ILC0_AZOC5
SCNpilot_expt_1000_bf_scaffold_928_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13749..15455
DNA (1707bp) protein (569aa)
sucA; 2-oxoglutarate dehydrogenase E1 component; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
MFS transporter n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000315E5A4
2-oxoglutarate dehydrogenase, E1 subunit {ECO:0000313|EMBL:KFC63680.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_928_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15452..16693
DNA (1242bp) protein (414aa)
sucA; 2-oxoglutarate dehydrogenase E1 component; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
MFS transporter n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000315E5A4
2-oxoglutarate dehydrogenase, E1 subunit {ECO:0000313|EMBL:KFC63680.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_928_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16818..18044
DNA (1227bp) protein (409aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] rbh
dihydrolipoamide succinyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E256C2 rbh
SCNpilot_expt_1000_bf_scaffold_928_21
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18064..18807
DNA (744bp) protein (248aa)
Glucose-1-dehydrogenase {ECO:0000313|EMBL:ESY34286.1}; EC=1.1.1.47 {ECO:0000313|EMBL:ESY34286.1};; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
UPI0003CE4A8C related cluster n=1 Tax=unknown RepID=UPI0003CE4A8C
putative dehydrogenase/reductase
SCNpilot_expt_1000_bf_scaffold_928_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18846..20249
DNA (1404bp) protein (468aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
Dihydrolipoyl dehydrogenase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IG90_BEII9 rbh
SCNpilot_expt_1000_bf_scaffold_928_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20335..21195)
DNA (861bp) protein (287aa)
5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
Bifunctional protein FolD n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=FOLD_MAGSA
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_928_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21232..22710
DNA (1479bp) protein (493aa)
amidohydrolase; K01485 cytosine deaminase [EC:3.5.4.1]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E8FB92 rbh
Cytosine deaminase-like metal-dependent hydrolase {ECO:0000313|EMBL:KFC63675.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_928_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22707..24131
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000309DF28 rbh
FAD linked oxidase domain protein {ECO:0000313|EMBL:KFC63674.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD linked oxidase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_928_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24137..24718
DNA (582bp) protein (194aa)
UPI0003CF9A27 related cluster n=1 Tax=unknown RepID=UPI0003CF9A27
Putative NAD(P)H dehydrogenase (Quinone) protein {ECO:0000313|EMBL:KFC63673.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NAD(P)H dehydrogenase (Quinone)
SCNpilot_expt_1000_bf_scaffold_928_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24822..25304
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000301AC3F
Putative transcriptional regulatory protein, MarR family {ECO:0000313|EMBL:KFC63672.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_928_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25399..26325
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F2490C rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC63671.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter rbh
SCNpilot_expt_1000_bf_scaffold_928_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26505..28469)
DNA (1965bp) protein (655aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000361A236 rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
K potassium transporter; K03549 KUP system potassium uptake protein
SCNpilot_expt_1000_bf_scaffold_928_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28548..28928)
DNA (381bp) protein (127aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003652242
Displaying items 1-30 of 171 in total

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