ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1224

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1224_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..389
DNA (387bp) protein (129aa)
chemotaxis protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034B0999
Putative methyl-accepting chemotaxis protein MCP {ECO:0000313|EMBL:KFC70966.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1224_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

706..1056
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC65472.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1224_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1138..1761)
DNA (624bp) protein (208aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHD8_9PROT
Rrf2-linked NADH-flavin reductase {ECO:0000313|EMBL:KFC65473.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K07118
SCNpilot_expt_1000_bf_scaffold_1224_4
unknown

Not on your lists

1779..1892
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1224_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1886..2296
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0003021355
Transcriptional regulatory protein PadR-like family protein {ECO:0000313|EMBL:KFC65474.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1224_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2456..2725
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Methylosinus sp. LW4 RepID=UPI00036DDAAD
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
SCNpilot_expt_1000_bf_scaffold_1224_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2989..5151
DNA (2163bp) protein (721aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] rbh
Polyribonucleotide nucleotidyltransferase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=PNP_METS4 rbh
SCNpilot_expt_1000_bf_scaffold_1224_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5370..6005
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJN0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28664.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1224_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6169..7167)
DNA (999bp) protein (333aa)
Putative pfkB family carbohydrate kinase Adenosine kinase {ECO:0000313|EMBL:KFC65479.1}; EC=2.7.1.20 {ECO:0000313|EMBL:KFC65479.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EB8B72
PfkB domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1224_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7245..7622)
DNA (378bp) protein (126aa)
Possible transcriptional regulator n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YE59_MOBAS
Anaerobic benzoate catabolism transcriptional regulator {ECO:0000313|EMBL:KFC65480.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1224_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7619..8179)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E401EE
Smr protein/MutS2 {ECO:0000313|EMBL:KFC65481.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Smr protein/MutS2
SCNpilot_expt_1000_bf_scaffold_1224_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8181..9350)
DNA (1170bp) protein (390aa)
MltA domain-containing protein; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-] rbh
Membrane-bound lytic murein transglycosylase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ13_9RHIZ rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:KFC65482.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1224_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9347..10075)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ12_9RHIZ rbh
Transporter {ECO:0000313|EMBL:KFC65483.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
import inner membrane translocase subunit Tim44
SCNpilot_expt_1000_bf_scaffold_1224_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10228..10827
DNA (600bp) protein (200aa)
Protein-export protein SecB n=5 Tax=Methylobacterium extorquens RepID=A9W302_METEP
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
secB; protein-export protein SecB; K03071 preprotein translocase subunit SecB
SCNpilot_expt_1000_bf_scaffold_1224_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10993..11733
DNA (741bp) protein (247aa)
Putative membrane protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IE92_AZOC5 rbh
Integral membrane protein TerC {ECO:0000313|EMBL:KFC65485.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
terC; hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1224_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11738..12454)
DNA (717bp) protein (239aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III subunit epsilon n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CLS0_9RHIZ
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:KFC65486.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_1224_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12459..13085)
DNA (627bp) protein (209aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318E6E6
SCNpilot_expt_1000_bf_scaffold_1224_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13108..13935)
DNA (828bp) protein (276aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
quinate shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate 5-dehydrogenase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWP7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1224_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13949..14566)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000380CD06
Maf-like protein FG93_04718 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
maf protein; K06287 septum formation protein
SCNpilot_expt_1000_bf_scaffold_1224_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14563..15393)
DNA (831bp) protein (277aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
PEP synthetase regulatory protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031EB01A rbh
hypothetical protein; K09773 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1224_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15817..16869
DNA (1053bp) protein (351aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=DCUP_BRASB
SCNpilot_expt_1000_bf_scaffold_1224_22
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16882..17304
DNA (423bp) protein (141aa)
UPI0003D0271F related cluster n=1 Tax=unknown RepID=UPI0003D0271F
Uncharacterized protein {ECO:0000313|EMBL:KFC65492.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TIGR00701 family protein
SCNpilot_expt_1000_bf_scaffold_1224_23
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17505..18620)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FVA5_PELBH rbh
Uncharacterized protein {ECO:0000313|EMBL:EAU48221.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1224_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18842..20845)
DNA (2004bp) protein (668aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F2EF0A rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC65494.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K06888
SCNpilot_expt_1000_bf_scaffold_1224_25
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20878..22191
DNA (1314bp) protein (438aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D58E2C rbh
SCNpilot_expt_1000_bf_scaffold_1224_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22258..24144
DNA (1887bp) protein (629aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=MNMG_METS4
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
SCNpilot_expt_1000_bf_scaffold_1224_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24141..24788
DNA (648bp) protein (216aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYV5_STAND
SCNpilot_expt_1000_bf_scaffold_1224_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24785..25615
DNA (831bp) protein (277aa)
chromosome partitioning protein ParA n=1 Tax=Methylopila sp. M107 RepID=UPI00035D7653
Chromosome segregation ATPase {ECO:0000313|EMBL:KFC65498.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein rbh
SCNpilot_expt_1000_bf_scaffold_1224_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25646..26533
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E98A90 rbh
ParB-like partition protein {ECO:0000313|EMBL:KFC65499.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
parB-like partition protein; K03497 chromosome partitioning protein, ParB family rbh
SCNpilot_expt_1000_bf_scaffold_1224_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26540..27568)
DNA (1029bp) protein (343aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYZ5_9RHIZ
DNA polymerase III, delta subunit {ECO:0000313|EMBL:KFC65500.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Displaying items 1-30 of 40 in total

View Taxonomy