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SCNpilot_expt_1000_bf_scaffold_9015

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9015_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..101
DNA (99bp) protein (33aa)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_9015_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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292..1191
DNA (900bp) protein (300aa)
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DE3151 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC63746.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_9015_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1384..2142
DNA (759bp) protein (253aa)
Methyltransferase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBL6_9PROT rbh
Methyltransferase {ECO:0000313|EMBL:EKE72147.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
SCNpilot_expt_1000_bf_scaffold_9015_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2277..2471
DNA (195bp) protein (65aa)
preprotein translocase subunit SecE n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036D7F8F
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
preprotein translocase, SecE subunit
SCNpilot_expt_1000_bf_scaffold_9015_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2486..3019
DNA (534bp) protein (178aa)
Transcription termination/antitermination protein NusG n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW92_9RHIZ rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
NusG antitermination factor; K02601 transcriptional antiterminator NusG rbh
SCNpilot_expt_1000_bf_scaffold_9015_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3310..3741
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A938_STAND
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_expt_1000_bf_scaffold_9015_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3755..4096
DNA (342bp) protein (114aa)
50S ribosomal protein L1 n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=RL1_BEII9
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_9015_8].
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
SCNpilot_expt_1000_bf_scaffold_9015_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4045..4434
DNA (390bp) protein (130aa)
50S ribosomal protein L1 n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CGK4_9RHIZ
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
SCNpilot_expt_1000_bf_scaffold_9015_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4949..5464
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003757087
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_expt_1000_bf_scaffold_9015_10
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5514..5894
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YT73_9RHIZ
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_expt_1000_bf_scaffold_9015_11
Bosea minatitlanensis, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6248..6865
DNA (618bp) protein (206aa)
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=2 Tax=Bosea minatitlanensis RepID=Q6XBL1_9BRAD
RNA polymerase beta subunit {ECO:0000313|EMBL:CCB78553.1}; Flags: Fragment;; TaxID=128782 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea minatitlanensis.;"
SCNpilot_expt_1000_bf_scaffold_9015_12
Bosea thiooxidans, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6900..10346
DNA (3447bp) protein (1149aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=53254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea thiooxidans.;"
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=2 Tax=Bosea thiooxidans RepID=Q6XBL2_9BRAD
SCNpilot_expt_1000_bf_scaffold_9015_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10437..10712
DNA (276bp) protein (92aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=4 Tax=Methylobacterium extorquens RepID=RPOC_METC4
Displaying 13 items

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