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SCNpilot_expt_1000_bf_scaffold_384

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_384_1
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..1127
DNA (1125bp) protein (375aa)
Aconitate hydratase {ECO:0000313|EMBL:KIC57293.1}; EC=4.2.1.3 {ECO:0000313|EMBL:KIC57293.1};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
acnA; aconitase A; K01681 aconitate hydratase 1 [EC:4.2.1.3]
aconitate hydratase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000379E2B5
SCNpilot_expt_1000_bf_scaffold_384_2
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1233..2381
DNA (1149bp) protein (383aa)
Aconitate hydratase {ECO:0000313|EMBL:EXJ51001.1}; EC=4.2.1.3 {ECO:0000313|EMBL:EXJ51001.1};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
acnA; aconitase A; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A9U9_9MICO
SCNpilot_expt_1000_bf_scaffold_384_3
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2466..4436
DNA (1971bp) protein (657aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
dxs; deoxyxylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A3Q8_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_384_4
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4697..7249
DNA (2553bp) protein (851aa)
aminopeptidase; K01256 aminopeptidase N [EC:3.4.11.2]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00035FF22A rbh
Aminopeptidase N {ECO:0000313|EMBL:EXJ51005.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
SCNpilot_expt_1000_bf_scaffold_384_5
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7320..8036)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A6EE9
Contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIP91988.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_384_6
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8177..10321)
DNA (2145bp) protein (715aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E396_9MICO rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KIC57297.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
fadB; 3-hydroxyacyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_384_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10333..11535)
DNA (1203bp) protein (401aa)
atoB; acetyl-CoA acetyltransferase; K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
Acetyl-CoA acetyltransferase n=2 Tax=Microbacterium RepID=H8E397_9MICO rbh
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EIC08647.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
SCNpilot_expt_1000_bf_scaffold_384_8
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11610..12806)
DNA (1197bp) protein (399aa)
ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5]
3'-5' exonuclease n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E398_9MICO
Ribonuclease D {ECO:0000313|EMBL:KIC57299.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_expt_1000_bf_scaffold_384_9
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12799..13359)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E399_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EIC08649.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_384_10
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13415..14644
DNA (1230bp) protein (410aa)
Hydrolase of the alpha/beta superfamily n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3A0_9MICO rbh
Hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:EIC08650.1}; Flags: Precursor;; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hydrolase of the alpha/beta superfamily
SCNpilot_expt_1000_bf_scaffold_384_11
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14641..15654
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A9V5_9MICO rbh
ATPase {ECO:0000313|EMBL:EXJ50619.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
ATPase; K06916
SCNpilot_expt_1000_bf_scaffold_384_12
Cryobacterium sp. MLB-32, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15842..17053
DNA (1212bp) protein (404aa)
ammonia channel protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B76742 rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
ammonia permease; K03320 ammonium transporter, Amt family
SCNpilot_expt_1000_bf_scaffold_384_13
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17164..17649
DNA (486bp) protein (162aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E3A3_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC08653.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
PemK domain-containing protein
SCNpilot_expt_1000_bf_scaffold_384_14
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17642..18361
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E9D1D9
PemK domain-containing protein {ECO:0000313|EMBL:KHK97358.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
PemK family protein
SCNpilot_expt_1000_bf_scaffold_384_15
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18955..19470
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A9V7_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD83365.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
amino acid-binding ACT protein
SCNpilot_expt_1000_bf_scaffold_384_16
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19669..21699
DNA (2031bp) protein (677aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000378FB77 rbh
SCNpilot_expt_1000_bf_scaffold_384_17
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21711..22283
DNA (573bp) protein (191aa)
Histidine triad (HIT) protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3A9_9MICO rbh
HIT family hydrolase {ECO:0000313|EMBL:KIC57315.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
SCNpilot_expt_1000_bf_scaffold_384_18
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22437..23294)
DNA (858bp) protein (286aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
Pyridoxal kinase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3B1_9MICO
pyridoxamine kinase
SCNpilot_expt_1000_bf_scaffold_384_19
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23291..24640)
DNA (1350bp) protein (450aa)
Regulatory protein GntR HTH n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3B2_9MICO
Transcriptional regulator {ECO:0000313|EMBL:KIC57545.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_384_20
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24725..25615
DNA (891bp) protein (297aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
pyridoxine biosynthesis protein; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-]
Pyridoxal biosynthesis lyase PdxS n=2 Tax=Microbacterium RepID=H8E3B3_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_384_21
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25737..26318
DNA (582bp) protein (194aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Glutamine amidotransferase subunit PdxT n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A2U3_9MICO
glutamine amidotransferase subunit PdxT
SCNpilot_expt_1000_bf_scaffold_384_22
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26321..27706)
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003113B2D rbh
Contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIP90899.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
pyridoxal-dependent decarboxylase rbh
SCNpilot_expt_1000_bf_scaffold_384_23
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27776..28315
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A9W5_9MICO
Pyridoxamine 5-phosphate oxidase {ECO:0000313|EMBL:EXJ50632.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_384_24
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28414..29172
DNA (759bp) protein (253aa)
transcriptional regulator n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003706008 rbh
Probable transcriptional regulatory protein HMPREF1529_02756 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_384_25
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29230..29799
DNA (570bp) protein (190aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
holliday junction resolvasome, endonuclease subunit; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
Crossover junction endodeoxyribonuclease RuvC n=2 Tax=Microbacterium RepID=H8E3B8_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_384_26
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30035..30655
DNA (621bp) protein (207aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
holliday junction resolvasome, DNA-binding subunit; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3B9_9MICO
SCNpilot_expt_1000_bf_scaffold_384_27
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30648..31706
DNA (1059bp) protein (353aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
ruvB; holliday junction resolvasome, helicase subunit; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3C0_9MICO
SCNpilot_expt_1000_bf_scaffold_384_28
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31768..32193
DNA (426bp) protein (142aa)
YajC family protein n=2 Tax=Microbacterium RepID=H8E3C1_9MICO
Preprotein translocase subunit YajC {ECO:0000313|EMBL:KIC57325.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_expt_1000_bf_scaffold_384_29
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32238..33968
DNA (1731bp) protein (577aa)
Protein translocase subunit SecD n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3C2_9MICO rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD
SCNpilot_expt_1000_bf_scaffold_384_30
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33968..34969
DNA (1002bp) protein (334aa)
Protein-export membrane protein SecF n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3C3_9MICO rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF
Displaying items 1-30 of 82 in total

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