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SCNpilot_expt_1000_bf_scaffold_576

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_576_1
unknown

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1..72
DNA (72bp) protein (24aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_576_2
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(86..334)
DNA (249bp) protein (83aa)
Transcriptional regulator WhiB n=1 Tax=Microbacterium sp. TS-1 RepID=U2YYM3_9MICO
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
regulatory protein
SCNpilot_expt_1000_bf_scaffold_576_3
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

595..993
DNA (399bp) protein (133aa)
Signal transduction histidine kinase n=2 Tax=Microbacterium RepID=H8E1N2_9MICO
Histidine kinase {ECO:0000313|EMBL:EXJ52506.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_576_4
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1029..1496)
DNA (468bp) protein (156aa)
bcp; peroxiredoxin; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=2 Tax=Microbacterium RepID=H8E1N3_9MICO
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:EIC09053.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
SCNpilot_expt_1000_bf_scaffold_576_5
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1592..3292
DNA (1701bp) protein (567aa)
acyl-CoA synthetase (EC:6.2.1.-) rbh
Acetyl-coenzyme A synthetase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XK92_9MICO rbh
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:GAD33585.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
SCNpilot_expt_1000_bf_scaffold_576_6
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3328..4365)
DNA (1038bp) protein (346aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
GTPase; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
Putative ribosome biogenesis GTPase RsgA n=2 Tax=Microbacterium RepID=H8E1N4_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_576_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4378..5721)
DNA (1344bp) protein (448aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
5-enolpyruvylshikimate-3-phosphate synthase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Microbacterium RepID=H8E1N5_9MICO
SCNpilot_expt_1000_bf_scaffold_576_8
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5775..6452
DNA (678bp) protein (226aa)
RNA polymerase sigma-70 factor n=2 Tax=Microbacterium RepID=H8E1N6_9MICO rbh
TIGR02947 family RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EPD86691.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
sigH; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_576_9
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6449..6694
DNA (246bp) protein (82aa)
Transmembrane transcriptional regulator n=2 Tax=Microbacterium RepID=H8E1N7_9MICO
Transmembrane transcriptional regulator {ECO:0000313|EMBL:EIC09057.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transmembrane transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_576_10
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6703..7602)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0003090561 rbh
Diacylglycerol kinase {ECO:0000313|EMBL:KIC58276.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
diacylglycerol kinase
SCNpilot_expt_1000_bf_scaffold_576_11
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7685..11416)
DNA (3732bp) protein (1244aa)
Alpha-ketoglutarate decarboxylase {ECO:0000313|EMBL:KIC58279.1}; EC=4.1.1.71 {ECO:0000313|EMBL:KIC58279.1};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
kgd; 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AXE0_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_576_12
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11526..12983
DNA (1458bp) protein (486aa)
Inosine 5'-monophosphate dehydrogenase {ECO:0000313|EMBL:EXJ52514.1}; EC=1.1.1.205 {ECO:0000313|EMBL:EXJ52514.1};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
guaB; IMP dehydrogenase/GMP reductase; K00088 IMP dehydrogenase [EC:1.1.1.205]
IMP dehydrogenase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AEJ2_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_576_13
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13112..14428
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1P4_9MICO rbh
Membrane protein {ECO:0000313|EMBL:EXJ52515.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hemolysins
SCNpilot_expt_1000_bf_scaffold_576_14
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14425..15480
DNA (1056bp) protein (352aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E1P5_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD86682.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hemolysins
SCNpilot_expt_1000_bf_scaffold_576_15
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15553..16626)
DNA (1074bp) protein (358aa)
NADH:flavin oxidoreductase/NADH oxidase n=2 Tax=Microbacterium RepID=H8E1P6_9MICO rbh
Oxidoreductase {ECO:0000313|EMBL:EXJ52517.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
NADH:flavin oxidoreductase, Old Yellow enzyme family
SCNpilot_expt_1000_bf_scaffold_576_16
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16669..17598
DNA (930bp) protein (310aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00037C60E5
sugar kinase
SCNpilot_expt_1000_bf_scaffold_576_17
Streptomyces turgidiscabies, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17628..18308)
DNA (681bp) protein (227aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7ET26_9ACTO
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:ELP62568.1}; TaxID=698760 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_576_18
Streptomyces sp. PAMC26508, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18420..18833
DNA (414bp) protein (138aa)
Transcriptional regulator, HxlR family n=2 Tax=Streptomyces RepID=E8WD55_STRFA
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGJ54752.1}; TaxID=1265601 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PAMC26508.;"
SCNpilot_expt_1000_bf_scaffold_576_19
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18952..20178
DNA (1227bp) protein (409aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E1P8_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD86679.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_576_20
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20235..20588
DNA (354bp) protein (118aa)
Uncharacterized conserved protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NBK1_MICTS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEP74721.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
SCNpilot_expt_1000_bf_scaffold_576_21
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20676..21818
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KCF1_9MICO
Inner membrane transport protein YdhP {ECO:0000313|EMBL:KJL18292.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
arabinose efflux permease; K08156 MFS transporter, DHA1 family, arabinose polymer transporter
SCNpilot_expt_1000_bf_scaffold_576_22
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21843..23045)
DNA (1203bp) protein (401aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
metX; homoserine acetyltransferase; K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
Homoserine O-acetyltransferase n=2 Tax=Microbacterium RepID=H8E1Q1_9MICO
SCNpilot_expt_1000_bf_scaffold_576_23
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23224..24546)
DNA (1323bp) protein (441aa)
Methionine gamma-lyase {ECO:0000313|EMBL:KJL31506.1}; EC=4.4.1.11 {ECO:0000313|EMBL:KJL31506.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
cysD; O-acetylhomoserine sulfhydrylase; K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034A6E14 rbh
SCNpilot_expt_1000_bf_scaffold_576_24
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24683..25459
DNA (777bp) protein (259aa)
oxidoreductase n=1 Tax=Microbacterium paraoxydans RepID=UPI00035D5172 rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EZP25992.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
short-chain alcohol dehydrogenase of unknown specificity
SCNpilot_expt_1000_bf_scaffold_576_25
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25572..26975)
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AC30_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD86673.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
permease of the major facilitator superfamily
SCNpilot_expt_1000_bf_scaffold_576_26
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27062..27586
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AXB4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86672.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
phosphoribosyltransferase; K07101
SCNpilot_expt_1000_bf_scaffold_576_27
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27586..28290
DNA (705bp) protein (235aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
ung; uracil DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1Q6_9MICO rbh
SCNpilot_expt_1000_bf_scaffold_576_28
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28315..28929
DNA (615bp) protein (205aa)
sortase; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
GCN5-related N-acetyltransferase n=2 Tax=Microbacterium RepID=H8E1Q7_9MICO rbh
Phosphinothricin acetyltransferase {ECO:0000313|EMBL:KIC58292.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_expt_1000_bf_scaffold_576_29
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28934..29365)
DNA (432bp) protein (144aa)
TPR repeat, SEL1 subfamily n=2 Tax=Microbacterium RepID=H8E1Q8_9MICO
TPR repeat, SEL1 subfamily {ECO:0000313|EMBL:EIC09078.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
TPR repeat, SEL1 subfamily
SCNpilot_expt_1000_bf_scaffold_576_30
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29349..30407)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AC24_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86668.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
zinc metalloprotease
Displaying items 1-30 of 73 in total

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