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SCNpilot_expt_1000_bf_scaffold_345

Search features with annotation key words

Displaying items 1-30 of 160 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_345_1
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(134..1189)
DNA (1056bp) protein (352aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
selD; selenide, water dikinase SelD (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3] rbh
Selenide, water dikinase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XGW5_9RALS rbh
SCNpilot_expt_1000_bf_scaffold_345_2
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1186..1992)
DNA (807bp) protein (269aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
Enoyl-[acyl-carrier protein] reductase (NADH) (EC:1.3.1.9); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9] rbh
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Limnobacter sp. MED105 RepID=A6GQB1_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_345_3
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2021..3907
DNA (1887bp) protein (629aa)
Tat pathway signal sequence domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWT0_9BURK rbh
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EFV95184.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
bacterial extracellular solute-binding s, 5 Middle family protein rbh
SCNpilot_expt_1000_bf_scaffold_345_4
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3907..4953
DNA (1047bp) protein (349aa)
ABC transporter, permease protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWS9_9BURK rbh
ABC transporter, permease protein {ECO:0000313|EMBL:EFV95183.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
binding-protein-dependent transport system inner membrane protein; K13894 microcin C transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_345_5
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4950..5978
DNA (1029bp) protein (343aa)
ABC transporter permease n=1 Tax=Ralstonia sp. PBA RepID=I9W169_9RALS rbh
ABC peptide transporter, inner membrane subunit {ECO:0000313|EMBL:BAO28964.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
binding-protein-dependent transport systems inner membrane component; K13895 microcin C transport system permease protein
SCNpilot_expt_1000_bf_scaffold_345_6
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5982..7586
DNA (1605bp) protein (535aa)
ABC-type uncharacterized transport system, duplicated ATPase component protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IPK3_HERSS rbh
ABC transporter ATPase; K13896 microcin C transport system ATP-binding protein rbh
ABC-type uncharacterized transport system, duplicated ATPase component protein {ECO:0000313|EMBL:ADJ64900.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
SCNpilot_expt_1000_bf_scaffold_345_7
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7771..9678)
DNA (1908bp) protein (636aa)
h16_A2463; soluble lytic murein transglycosylase or relatedregulatory protein (EC:3.2.1.-); K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-]
Transglycosylase SLT domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWR9_9BURK rbh
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EFV95173.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_345_8
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10034..10825
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R1Y1_CUPTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAQ69937.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_expt_1000_bf_scaffold_345_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10822..12288)
DNA (1467bp) protein (489aa)
xylC; benzaldehyde dehydrogenase (EC:1.2.1.28); K00141 benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28]
Probable benzaldehyde dehydrogenase (NAD+) n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K8D5_AZOSB
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
SCNpilot_expt_1000_bf_scaffold_345_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12336..13466)
DNA (1131bp) protein (377aa)
acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase-like id=4949658 bin=GWA2_Methylomirabilis_73_35 species=Marinobacter nanhaiticus genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SCNpilot_expt_1000_bf_scaffold_345_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13505..14692)
DNA (1188bp) protein (396aa)
Acyl-CoA dehydrogenase n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WFP0_9GAMM
acyl-CoA dehydrogenase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_345_12
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14696..16228)
DNA (1533bp) protein (511aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDG7_9BRAD
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIG57823.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_345_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16225..16641)
DNA (417bp) protein (139aa)
Putative nucleic-acid-binding protein containing a Zn-ribbon n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDG8_9BRAD
hypothetical protein; K07068
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_345_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16638..17816)
DNA (1179bp) protein (393aa)
thiolase n=1 Tax=Amorphus coralli RepID=UPI0003612FD0
thiolase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_345_15
GWA2_Polynucleobacter_45_21_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17821..18840)
DNA (1020bp) protein (340aa)
Uncharacterized protein id=2165428 bin=GWA2_Polynucleobacter_45_21 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Polynucleobacter_45_21 organism_group=Betaproteobacteria
putative extra-cytoplasmic solute receptor
Tax=GWA2_Polynucleobacter_45_21_curated
SCNpilot_expt_1000_bf_scaffold_345_16
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18935..19912)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QSP7_RALPI
MFS transporter {ECO:0000313|EMBL:KJK21411.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_345_17
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19928..21451)
DNA (1524bp) protein (508aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000377CFEF
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIG57823.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_345_18
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21480..21896)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00038281E4
hypothetical protein; K07068
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_345_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21909..23078)
DNA (1170bp) protein (390aa)
thiolase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037AEA66
thiolase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_345_20
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23088..23900)
DNA (813bp) protein (271aa)
enoyl-CoA hydratase/isomerase; K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDH0_9BRAD
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EIG57826.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_345_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24294..24851
DNA (558bp) protein (186aa)
Transcriptional regulator, TetR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJX3_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KIZ47849.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_345_22
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24938..26158)
DNA (1221bp) protein (407aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WCC7_BURSC
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
SCNpilot_expt_1000_bf_scaffold_345_23
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26251..26703
DNA (453bp) protein (151aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
rnhA2; ribonuclease H (EC:3.1.26.4); K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H n=2 Tax=Thauera RepID=N6XRR5_9RHOO
SCNpilot_expt_1000_bf_scaffold_345_24
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26786..28024
DNA (1239bp) protein (413aa)
secretion protein HylD n=1 Tax=Azoarcus toluclasticus RepID=UPI00036DEBCF
HlyD-like secretion protein
Putative HlyD-like secretion protein {ECO:0000313|EMBL:CAI10153.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_345_25
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28021..31128
DNA (3108bp) protein (1036aa)
RND efflux transporter, permease protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KA95_AZOSB rbh
RND efflux transporter permease; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
RND efflux transporter, permease protein {ECO:0000313|EMBL:CAL95751.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_345_26
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31148..31876
DNA (729bp) protein (243aa)
DNA polymerase III epsilon subunit {ECO:0000313|EMBL:AIY42457.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AIY42457.1};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
dnaQ; DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III epsilon subunit n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AB94_COLFT
SCNpilot_expt_1000_bf_scaffold_345_27
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31936..33138
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWR4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95168.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_345_28
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33186..33743)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003785971
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_1000_bf_scaffold_345_29
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33885..34316
DNA (432bp) protein (144aa)
ArsR family transcriptional regulator n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000361006C
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG21354.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
ArsR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_345_30
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34313..35752
DNA (1440bp) protein (480aa)
Sulfite oxidase molybdopterin subunit n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN27_9BURK rbh
Sulfite oxidase molybdopterin subunit {ECO:0000313|EMBL:EIK90617.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
soxC; sulfite oxidase molybdopterin subunit
Displaying items 1-30 of 160 in total

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