ggKbase home page

SCNpilot_expt_1000_bf_scaffold_357

Search features with annotation key words

Displaying items 1-30 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_357_1
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1096)
DNA (1095bp) protein (365aa)
nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:ACB33751.1}; EC=1.7.2.4 {ECO:0000313|EMBL:ACB33751.1};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Nitrous-oxide reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y809_LEPCP
SCNpilot_expt_1000_bf_scaffold_357_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1359..2384
DNA (1026bp) protein (342aa)
ApbE family lipoprotein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y810_LEPCP
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
ApbE family lipoprotein {ECO:0000313|EMBL:ACB33752.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_357_3
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2291..3343)
DNA (1053bp) protein (351aa)
Fructose-1,6-bisphosphatase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; Short=FBPase class 1 {ECO:0000256|HAMAP-Rule:MF_01855};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01855};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1 {ECO:0000256|HAMAP-Rule:MF_01855}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
D-fructose-1,6-bisphosphate 1-phosphohydrolase; K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11]
fructose-1 6-bisphosphatase n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00031EB6A9
SCNpilot_expt_1000_bf_scaffold_357_4
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3375..6137)
DNA (2763bp) protein (921aa)
Aminopeptidase N (Alpha-aminoacyl peptide hydrolase) metalloprotease pepN {ECO:0000313|EMBL:EAP71627.1}; EC=3.4.11.2 {ECO:0000313|EMBL:EAP71627.1};; TaxID=342110 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
pepN; aminopeptidase n (EC:3.4.11.2); K01256 aminopeptidase N [EC:3.4.11.2] rbh
Aminopeptidase n (Alpha-aminoacylpeptide hydrolase) metalloprotease protein n=2 Tax=Ralstonia solanacearum RepID=B5SF57_RALSL rbh
SCNpilot_expt_1000_bf_scaffold_357_5
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6155..6862
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWH3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95077.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_357_6
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6902..7495)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXP1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV94715.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
SCNpilot_expt_1000_bf_scaffold_357_7
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7492..9159)
DNA (1668bp) protein (556aa)
Convertase P-domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXP0_9BURK rbh
Convertase P-domain protein {ECO:0000313|EMBL:EFV94714.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Furin
SCNpilot_expt_1000_bf_scaffold_357_8
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9294..12857
DNA (3564bp) protein (1188aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
Pyruvate carboxylase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXN9_9BURK rbh
pyruvate carboxylase rbh
SCNpilot_expt_1000_bf_scaffold_357_9
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12854..13741
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z2C4_9RHOO rbh
Membrane protein {ECO:0000313|EMBL:KHK57420.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_357_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13793..14335)
DNA (543bp) protein (181aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034DB997
ABC transporter-like protein; K02023 multiple sugar transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:KFC63664.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_357_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14299..14826)
DNA (528bp) protein (176aa)
ABC-type sugar transport systems, ATPase component protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8J235_HERSS
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB11285.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
sugar ABC transporter ATPase; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_357_12
unknown

Not on your lists

14980..15450
DNA (471bp) protein (157aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_357_13
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15447..15737
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003696D6E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_357_14
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15812..16192
DNA (381bp) protein (127aa)
Possible Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIX5_THIDA
30S ribosomal protein S30P / sigma 54 modulation protein
Tax=RBG_16_Gallionellales_56_9_curated
SCNpilot_expt_1000_bf_scaffold_357_15
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16252..17463)
DNA (1212bp) protein (404aa)
Esterase of the alpha-beta hydrolase superfamily protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CY45_9BURK
Esterase of the alpha-beta hydrolase superfamily protein {ECO:0000313|EMBL:EIJ48538.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
alpha/beta hydrolase superfamily esterase; K07001 NTE family protein
SCNpilot_expt_1000_bf_scaffold_357_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17572..18357
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WB45_9GAMM rbh
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_357_17
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18368..20116
DNA (1749bp) protein (583aa)
Sodium/hydrogen exchanger n=1 Tax=Thauera phenylacetica B4P RepID=N6YTY3_9RHOO rbh
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ENO87698.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family rbh
SCNpilot_expt_1000_bf_scaffold_357_18
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20113..20997
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0B268_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ16898.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
uspA; UspA
SCNpilot_expt_1000_bf_scaffold_357_19
unknown

Not on your lists

comp(21043..21243)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00031558C4
SCNpilot_expt_1000_bf_scaffold_357_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21224..23020)
DNA (1797bp) protein (599aa)
FAD-dependent oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00035D07B5
putative 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase
Putative 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase {ECO:0000313|EMBL:AGU52002.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_357_21
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23065..24213)
DNA (1149bp) protein (383aa)
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] id=5081807 bin=GWF1_Burkholderiales_GWF1_66_17 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] rbh
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_357_22
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24362..25822
DNA (1461bp) protein (487aa)
ald; benzaldehyde dehydrogenase (EC:1.2.1.28); K00141 benzaldehyde dehydrogenase (NAD) [EC:1.2.1.28] rbh
Putative benzaldehyde dehydrogenase {ECO:0000313|EMBL:CAI09334.1}; EC=1.2.1.28 {ECO:0000313|EMBL:CAI09334.1};; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Putative benzaldehyde dehydrogenase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P030_AROAE rbh
SCNpilot_expt_1000_bf_scaffold_357_23
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25902..26981
DNA (1080bp) protein (360aa)
hypothetical protein id=5081809 bin=GWF1_Burkholderiales_GWF1_66_17 species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_357_24
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27014..28186
DNA (1173bp) protein (391aa)
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase id=1269049 bin=GWE1_Burkholderiales_65_30 species=Saccharomonospora cyanea genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
mandelate racemase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_357_25
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28216..29415
DNA (1200bp) protein (400aa)
putative fatty acid-CoA racemase; K01796 alpha-methylacyl-CoA racemase [EC:5.1.99.4]
carnitine dehydratase n=1 Tax=Cupriavidus sp. WS RepID=UPI00036BD9EA
Carnitine dehydratase {ECO:0000313|EMBL:KJK22760.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_expt_1000_bf_scaffold_357_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29478..30119)
DNA (642bp) protein (214aa)
TetR family transcriptional regulator id=5081806 bin=GWF1_Burkholderiales_GWF1_66_17 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
transcriptional regulator, TetR family
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_357_27
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30214..31464)
DNA (1251bp) protein (417aa)
acyl-CoA transferase id=1269044 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
acyl-CoA transferase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_357_28
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31554..32732)
DNA (1179bp) protein (393aa)
pobA; 4-hydroxybenzoate 3-monooxygenase (EC:1.14.13.2); K00481 p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2]
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:EAU64077.1}; EC=1.14.13.2 {ECO:0000313|EMBL:EAU64077.1};; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Caldimonas manganoxidans RepID=UPI00036F24DB
SCNpilot_expt_1000_bf_scaffold_357_29
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32962..33642
DNA (681bp) protein (227aa)
fructose-2,6-bisphosphatase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00031B19E8
Phosphoglycerate / bisphosphoglycerate mutase {ECO:0000313|EMBL:EKZ98199.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
phosphoglycerate / bisphosphoglycerate mutase
SCNpilot_expt_1000_bf_scaffold_357_30
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33664..33906)
DNA (243bp) protein (81aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K1V7_AZOSB
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CAL92812.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Displaying items 1-30 of 76 in total

View Taxonomy