ggKbase home page

SCNpilot_expt_1000_bf_scaffold_366

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_366_1
unknown

Not on your lists

comp(1..60)
DNA (60bp) protein (20aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_366_2
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96..1268)
DNA (1173bp) protein (391aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
Epoxyqueuosine reductase n=1 Tax=Thauera sp. 63 RepID=N6YBT5_9RHOO
iron-sulfur 4Fe-4S ferredoxin protein
SCNpilot_expt_1000_bf_scaffold_366_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1299..1784
DNA (486bp) protein (162aa)
P-loop hydrolase; K06925 UPF0079 ATP-binding protein id=12493595 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K06925 UPF0079 ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_366_4
Burkholderiaceae bacterium 26, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1745..3139
DNA (1395bp) protein (465aa)
amiC; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000361AD13
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:KJK04187.1}; TaxID=1619951 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 26.;"
SCNpilot_expt_1000_bf_scaffold_366_5
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3219..3917)
DNA (699bp) protein (233aa)
Response regulator n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AMR9_9PROT
response regulator
Response regulator {ECO:0000313|EMBL:BAN36114.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_366_6
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4142..4810)
DNA (669bp) protein (223aa)
SNARE-like domain protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXX5_9BURK
SNARE-like domain protein {ECO:0000313|EMBL:EFV94799.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein; K03975 membrane-associated protein
SCNpilot_expt_1000_bf_scaffold_366_7
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4819..6828
DNA (2010bp) protein (670aa)
DNA mismatch repair protein MutL n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WZ57_9BURK
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL
SCNpilot_expt_1000_bf_scaffold_366_8
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6828..8060
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003690E7A
bssH; transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_expt_1000_bf_scaffold_366_9
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8057..9037
DNA (981bp) protein (327aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
tRNA delta(2)-isopentenylpyrophosphate transferase n=2 Tax=Pandoraea RepID=V5UDA5_9BURK rbh
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
SCNpilot_expt_1000_bf_scaffold_366_10
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9080..13045)
DNA (3966bp) protein (1322aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003668456
Uncharacterized protein {ECO:0000313|EMBL:EEG10072.1}; Flags: Precursor;; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
hypothetical protein; K09800 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_366_11
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13045..14868)
DNA (1824bp) protein (608aa)
Outer membrane protein, OMP85 family n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RZ56_9BURK rbh
Outer membrane protein, OMP85 family {ECO:0000313|EMBL:EFV93855.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Surface antigen
SCNpilot_expt_1000_bf_scaffold_366_12
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14882..15943)
DNA (1062bp) protein (354aa)
purM; phosphoribosylaminoimidazole synthetase (AIR synthetase) (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] rbh
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas
Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Ralstonia RepID=D8NYX0_RALSL rbh
SCNpilot_expt_1000_bf_scaffold_366_13
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16099..17166
DNA (1068bp) protein (356aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0G6_LEPCP rbh
Putative permease often clustered with de novo purine synthesis {ECO:0000313|EMBL:AIY43547.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_366_14
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17223..17906
DNA (684bp) protein (228aa)
DnaA regulatory inactivator Hda n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2ICH7_9BURK
DnaA regulatory inactivator Hda {ECO:0000313|EMBL:EIF28429.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
DnaA regulatory inactivator Hda; K10763 DnaA-homolog protein
SCNpilot_expt_1000_bf_scaffold_366_15
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17903..18607
DNA (705bp) protein (235aa)
Had-superfamily subfamily ib, pspase-like protein n=1 Tax=Ralstonia solanacearum (strain Po82) RepID=F6FYU5_RALS8
had-superfamily subfamily ib, pspase-like; protein
Had-superfamily subfamily ib, pspase-like protein {ECO:0000313|EMBL:AEG68178.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain Po82).;"
SCNpilot_expt_1000_bf_scaffold_366_16
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18604..20088
DNA (1485bp) protein (495aa)
Poly(A) polymerase I {ECO:0000256|HAMAP-Rule:MF_00957}; Short=PAP I {ECO:0000256|HAMAP-Rule:MF_00957};; EC=2.7.7.19 {ECO:0000256|HAMAP-Rule:MF_00957};; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
pcnB; tRNA nucleotidyltransferase/poly(A) polymerase (EC:2.7.7.19); K00970 poly(A) polymerase [EC:2.7.7.19] rbh
Poly(A) polymerase I n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IYI8_HERSS rbh
SCNpilot_expt_1000_bf_scaffold_366_17
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20097..20615
DNA (519bp) protein (173aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:EWS53701.1}; EC=2.7.6.3 {ECO:0000313|EMBL:EWS53701.1};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SK83_METPP
SCNpilot_expt_1000_bf_scaffold_366_18
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20612..20959
DNA (348bp) protein (116aa)
membrane protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI000315C7BC
Uncharacterized protein {ECO:0000313|EMBL:EJL86714.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein; K09922 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_366_19
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20956..21621
DNA (666bp) protein (222aa)
deoxynucleoside kinase (EC:2.7.1.76); K10353 deoxyadenosine kinase [EC:2.7.1.76]
Deoxyadenosine kinase n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1W3V4_9BURK rbh
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_expt_1000_bf_scaffold_366_20
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21629..22474
DNA (846bp) protein (282aa)
panC; pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
pantoate--beta-alanine ligase n=1 Tax=Variovorax paradoxus RepID=UPI0003728D1E
Tax=CG_Rhodof_04
SCNpilot_expt_1000_bf_scaffold_366_21
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22550..23338)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCA2_ACISJ
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_366_22
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23604..24323)
DNA (720bp) protein (240aa)
hypothetical protein; K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20] rbh
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82X48_NITEU rbh
Uncharacterized protein {ECO:0000313|EMBL:CAD84358.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_366_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24496..24843)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MU97_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_366_24
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24806..25120)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B1N3_9PROT
hypothetical protein
Tax=CG_Beta_01
SCNpilot_expt_1000_bf_scaffold_366_25
unknown

Not on your lists

25183..25974
DNA (792bp) protein (264aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_366_26
R_WOR_2_50_17, WOR-2, Bacteria

Not on your lists

comp(25846..27297)
DNA (1452bp) protein (484aa)
DNA topoisomerase type IA zn finger domain protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NW93_9BACT
hypothetical protein rbh
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_50_17_curated
SCNpilot_expt_1000_bf_scaffold_366_27
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27366..27671
DNA (306bp) protein (102aa)
Transposition helper protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YM96_9RHOO
Transposition helper protein {ECO:0000313|EMBL:ENO83477.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
IstB domain-containing ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_366_28
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27865..28617)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WZQ3_ACISM
Uncharacterized protein {ECO:0000313|EMBL:AKD56957.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_366_29
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29277..29783)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82T32_NITEU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAD86010.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_366_30
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29805..30221)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82T31_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD86011.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
Displaying items 1-30 of 77 in total

View Taxonomy