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SCNpilot_expt_1000_bf_scaffold_430

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_430_1
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..731)
DNA (729bp) protein (243aa)
Methyltransferase type 11 n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K9W7_NITWC
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:ADJ29325.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
SCNpilot_expt_1000_bf_scaffold_430_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(823..1806)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003699106
putative undecaprenyl phosphate N-acetylglucosaminyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_430_3
Ralstonia sp. 5_2_56FAA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1841..2659)
DNA (819bp) protein (273aa)
Chain length determinant protein n=2 Tax=Ralstonia RepID=E2SY58_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EGY62937.1}; TaxID=658080 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. 5_2_56FAA.;"
putative exopolysaccharide chain length determinant protein
SCNpilot_expt_1000_bf_scaffold_430_4
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2826..4061)
DNA (1236bp) protein (412aa)
Glycosyl transferase group 1 n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJJ1_DESAR
group 1 glycosyl transferase
Tax=BJP_IG2069_Desfulfarculales_53_13
SCNpilot_expt_1000_bf_scaffold_430_5

Not on your lists

comp(4058..5029)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CQE1_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD88192.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
NAD-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_430_6
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5014..6135)
DNA (1122bp) protein (374aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP59114.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
glycosyl transferase group 1 id=45804 bin=ACD39 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown
glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_430_7
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6216..7565)
DNA (1350bp) protein (450aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP59105.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
SCNpilot_expt_1000_bf_scaffold_430_8
RIFOXYA2_FULL_Elusimicrobia_53_38_curated, Elusimicrobia, Bacteria

Not on your lists

comp(7579..8520)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GJT2_METPE
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_53_38_curated
SCNpilot_expt_1000_bf_scaffold_430_9

Not on your lists

comp(8511..9311)
DNA (801bp) protein (267aa)
hypothetical protein id=45811 bin=ACD39 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown
Uncharacterized protein {ECO:0000313|EMBL:EKD83496.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
methyltransferase
SCNpilot_expt_1000_bf_scaffold_430_10
CG_Mariprof_02, Zetaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9331..10830)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYJ5_9PROT
polysaccharide biosynthesis protein
Tax=CG_Mariprof_02
SCNpilot_expt_1000_bf_scaffold_430_11
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10837..12825)
DNA (1989bp) protein (663aa)
asparagine synthetase; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00037B3140 rbh
Asparagine synthase {ECO:0000313|EMBL:AJP59109.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
SCNpilot_expt_1000_bf_scaffold_430_12
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14295..15059)
DNA (765bp) protein (255aa)
glycosyl transferase n=1 Tax=Methyloversatilis universalis RepID=UPI000376CF24
Putative beta-glycosyltransferase {ECO:0000313|EMBL:EGK70148.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
family 2 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_430_13
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15056..16036)
DNA (981bp) protein (327aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
NAD-dependent epimerase/dehydratase; K02377 GDP-L-fucose synthase [EC:1.1.1.271] rbh
GDP-L-fucose synthase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VMW5_9RHIZ rbh
SCNpilot_expt_1000_bf_scaffold_430_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16049..17140)
DNA (1092bp) protein (364aa)
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47]
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
GDP-mannose 4,6-dehydratase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI04_THIDA
SCNpilot_expt_1000_bf_scaffold_430_15
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17493..19388
DNA (1896bp) protein (632aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000365B60C rbh
capDb; capsular polysaccharide biosynthesis protein rbh
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:BAL26040.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_430_16
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19505..19750
DNA (246bp) protein (82aa)
hypothetical protein SCB01_14669 id=3785452 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_1000_bf_scaffold_430_17
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19747..20184
DNA (438bp) protein (146aa)
PilT protein-like id=3785451 bin=GWC2_Methylomirabilis_70_24 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
PilT protein domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_430_18
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20255..21646
DNA (1392bp) protein (464aa)
Phosphoglucomutase n=1 Tax=Azoarcus sp. KH32C RepID=H0PY21_9RHOO
phosphoglucomutase
Phosphoglucomutase {ECO:0000313|EMBL:BAL23363.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_430_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21687..21920
DNA (234bp) protein (78aa)
Putative uncharacterized protein id=4880641 bin=GWC2_Chloroflexi_73_18 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_430_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21920..22348
DNA (429bp) protein (143aa)
PilT domain-containing protein n=1 Tax=mine drainage metagenome RepID=T0ZSG9_9ZZZZ
PilT protein domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_430_21
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22336..22695)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036B5BD0
hns-like transcription regulator protein; K03746 DNA-binding protein H-NS
Putative hns-like transcription regulator protein {ECO:0000313|EMBL:CAP43083.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_430_22
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22912..23766)
DNA (855bp) protein (285aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FB1A0C
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
SCNpilot_expt_1000_bf_scaffold_430_23
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23876..24424)
DNA (549bp) protein (183aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ABM56477.1}; EC=5.1.3.13 {ECO:0000313|EMBL:ABM56477.1};; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WFS0_VEREI
SCNpilot_expt_1000_bf_scaffold_430_24
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24421..25545)
DNA (1125bp) protein (375aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Azoarcus toluclasticus RepID=UPI000382342C
rmlB; dTDP-D-glucose 4,6-dehydratase
SCNpilot_expt_1000_bf_scaffold_430_25
Pseudomonas sp. 20_BN, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25601..26572
DNA (972bp) protein (324aa)
lipopolysaccharide heptosyltransferase I, waaC; K02841 heptosyltransferase I [EC:2.4.-.-]
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003727AF8
Lipopolysaccharide heptosyltransferase I {ECO:0000313|EMBL:CDZ94654.1}; TaxID=1499686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 20_BN.;"
SCNpilot_expt_1000_bf_scaffold_430_26
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26569..27924
DNA (1356bp) protein (452aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.4.-.-); K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PP72_9BURK
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_430_27
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27914..29413)
DNA (1500bp) protein (500aa)
Channel protein TolC n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QKT0_RALPI rbh
Channel protein TolC {ECO:0000313|EMBL:AGW91634.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
acrC5; cation/multidrug efflux system outer membrane porin; K12340 outer membrane channel protein rbh
SCNpilot_expt_1000_bf_scaffold_430_28
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29478..29792)
DNA (315bp) protein (105aa)
sulfurtransferase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000360DAEC
rhodanese-like protein
Rhodanese-like protein {ECO:0000313|EMBL:AAZ60130.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_430_29
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29813..30478)
DNA (666bp) protein (222aa)
protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:ADG30344.1}; EC=2.1.1.77 {ECO:0000313|EMBL:ADG30344.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000376EBD1
SCNpilot_expt_1000_bf_scaffold_430_30
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30501..33623)
DNA (3123bp) protein (1041aa)
Cation/multidrug efflux pump n=1 Tax=Herbaspirillum sp. YR522 RepID=J2VLA8_9BURK rbh
Cation/multidrug efflux pump {ECO:0000313|EMBL:EJN00840.1}; Flags: Precursor;; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. YR522.;"
acrB4; cation/multidrug efflux pump; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
Displaying items 1-30 of 97 in total

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