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SCNpilot_expt_1000_bf_scaffold_579

Search features with annotation key words

Displaying items 1-30 of 134 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_579_1
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..659
DNA (657bp) protein (219aa)
nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:ACB33751.1}; EC=1.7.2.4 {ECO:0000313|EMBL:ACB33751.1};; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
Nitrous-oxide reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y809_LEPCP
SCNpilot_expt_1000_bf_scaffold_579_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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713..3343
DNA (2631bp) protein (877aa)
FMN-binding domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y808_LEPCP rbh
FMN-binding domain-containing protein rbh
FMN-binding domain protein {ECO:0000313|EMBL:ACB33750.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_579_3
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3400..4653
DNA (1254bp) protein (418aa)
Periplasmic copper-binding n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y807_LEPCP rbh
periplasmic copper-binding protein; K07218 nitrous oxidase accessory protein rbh
Periplasmic copper-binding {ECO:0000313|EMBL:ACB33749.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_579_4
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4643..5674
DNA (1032bp) protein (344aa)
ABC transporter-related protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y806_LEPCP
ABC transporter-like protein; K01990 ABC-2 type transport system ATP-binding protein
ABC transporter-related protein {ECO:0000313|EMBL:ACB33748.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_579_5
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5671..6129
DNA (459bp) protein (153aa)
ABC-2 type transporter n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y805_LEPCP
ABC-2 type transporter; K01992 ABC-2 type transport system permease protein
ABC-2 type transporter {ECO:0000313|EMBL:ACB33747.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_579_6
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6078..6461
DNA (384bp) protein (128aa)
ABC transporter n=1 Tax=Acidovorax sp. NO-1 RepID=H0C4S9_9BURK
ABC transporter {ECO:0000313|EMBL:EHL20413.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
ABC-2 type transporter; K01992 ABC-2 type transport system permease protein
SCNpilot_expt_1000_bf_scaffold_579_7
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6458..7045
DNA (588bp) protein (196aa)
NosL family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T722_ACIDE
NosL family protein {ECO:0000313|EMBL:EER59735.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
NosL family protein
SCNpilot_expt_1000_bf_scaffold_579_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7057..7725
DNA (669bp) protein (223aa)
hypothetical protein id=12550733 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_579_9
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7742..10477)
DNA (2736bp) protein (912aa)
acyl-CoA synthetase (EC:6.2.1.3); K09181 hypothetical protein
GCN5 family acetyltransferase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036FAC2D
Tax=CG_Rhodof_02
SCNpilot_expt_1000_bf_scaffold_579_10
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10536..11462)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y993_9BURK
histone deacetylase superfamily protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_expt_1000_bf_scaffold_579_11
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11626..13515
DNA (1890bp) protein (630aa)
Cl-channel voltage-gated family protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KAT4_NITWC rbh
Cl-channel voltage-gated family protein rbh
Cl-channel voltage-gated family protein {ECO:0000313|EMBL:ADJ29511.1}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
SCNpilot_expt_1000_bf_scaffold_579_12
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13442..13912)
DNA (471bp) protein (157aa)
ExbD protein n=1 Tax=Thauera phenylacetica B4P RepID=N7A427_9RHOO
ExbD protein {ECO:0000313|EMBL:ENO99034.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
exbD; biopolymer transport protein; K03559 biopolymer transport protein ExbD
SCNpilot_expt_1000_bf_scaffold_579_13
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13914..14681)
DNA (768bp) protein (256aa)
ExbB oriteub n=1 Tax=Thauera phenylacetica B4P RepID=N6Z583_9RHOO rbh
ExbB oriteub {ECO:0000313|EMBL:ENO99035.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
exbB; ExbB oriteub; K03561 biopolymer transport protein ExbB
SCNpilot_expt_1000_bf_scaffold_579_14
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14730..15563)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6YXN7_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO99036.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_579_15
Neisseria bacilliformis, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15567..17054)
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Neisseria bacilliformis ATCC BAA-1200 RepID=F2BFD7_9NEIS rbh
Uncharacterized protein {ECO:0000313|EMBL:EGF09009.1}; TaxID=888742 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria bacilliformis ATCC BAA-1200.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_579_16
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17147..18040)
DNA (894bp) protein (298aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U6AIE7_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:EXF45985.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_579_17
Neisseria bacilliformis, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18110..21733)
DNA (3624bp) protein (1208aa)
Putative Ton-B dependent hemine receptor n=2 Tax=Pseudomonas aeruginosa RepID=U6AKL9_PSEAI rbh
TonB-dependent receptor {ECO:0000313|EMBL:EGF09005.1}; TaxID=888742 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria bacilliformis ATCC BAA-1200.;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_579_18
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21950..22978)
DNA (1029bp) protein (343aa)
Putative FecR protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82V81_NITEU rbh
fecR; FecR protein rbh
Putative FecR protein {ECO:0000313|EMBL:CAD85129.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_579_19
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22984..23571)
DNA (588bp) protein (196aa)
RNA polymerase sigma factor n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IDD4_BORPD
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000313|EMBL:CAP44806.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_579_20
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23693..24280)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ISA9_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP43278.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_579_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24398..24907)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00030EE687
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_579_22
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25046..25906
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JQH3_AGRRK
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_579_23

Not on your lists

26056..26346
DNA (291bp) protein (97aa)
Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E231_THIND
Marine sediment metagenome DNA, contig: S03H2_S04021 {ECO:0000313|EMBL:GAH49304.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
SCNpilot_expt_1000_bf_scaffold_579_24
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26346..26711
DNA (366bp) protein (122aa)
Plasmid stabilization system protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E1Y9_THIND
plasmid stabilization system protein
Plasmid stabilization system protein {ECO:0000313|EMBL:AGA35308.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
SCNpilot_expt_1000_bf_scaffold_579_25
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27011..27814)
DNA (804bp) protein (268aa)
LysR family transcriptional regulator n=1 Tax=Thauera sp. 63 RepID=N6YAX6_9RHOO rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ENO79278.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_579_26
unknown

Not on your lists

27989..28924
DNA (936bp) protein (312aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_579_27
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28933..29616
DNA (684bp) protein (228aa)
transcriptional regulator n=1 Tax=Azoarcus toluclasticus RepID=UPI00035E53EA
copR; two component response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_expt_1000_bf_scaffold_579_28
R_Methylotenera_45_14, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29616..31013
DNA (1398bp) protein (466aa)
hypothetical protein n=1 Tax=Methylotenera mobilis RepID=UPI0003821D84
copS_cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS
Tax=RIFCSPLOWO2_02_FULL_Methylotenera_45_14_curated
SCNpilot_expt_1000_bf_scaffold_579_29
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31227..31865
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000368E054 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL22802.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_579_30
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31869..32339)
DNA (471bp) protein (157aa)
Cytochrome n=1 Tax=Oceanibaculum indicum P24 RepID=K2J5E8_9PROT
Cytochrome C {ECO:0000313|EMBL:EWY42501.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
putative cytochrome c
Displaying items 1-30 of 134 in total

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