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SCNpilot_expt_1000_bf_scaffold_981

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_981_1
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2044)
DNA (2043bp) protein (681aa)
RNA polymerase sigma factor RpoD n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXV3_9BURK
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
SCNpilot_expt_1000_bf_scaffold_981_2
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2202..4022)
DNA (1821bp) protein (607aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
dnaG; DNA primase (EC:2.7.7.-); K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AIS5_COLFT
SCNpilot_expt_1000_bf_scaffold_981_3
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4025..4474)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WEU0_BURSC
hypothetical protein; K09117 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG19215.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_expt_1000_bf_scaffold_981_4
Sutterella wadsworthensis, Sutterella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4578..4790)
DNA (213bp) protein (71aa)
30S ribosomal protein S21 n=5 Tax=Sutterella RepID=E7H432_9BURK
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=742821 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella.;" source="Sutterella wadsworthensis 3_1_45B.;"
SSU ribosomal protein S21P; K02970 small subunit ribosomal protein S21
SCNpilot_expt_1000_bf_scaffold_981_5
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4985..6001
DNA (1017bp) protein (339aa)
ATPase AAA; K01338 ATP-dependent Lon protease [EC:3.4.21.53] rbh
AAA ATPase central domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WMD9_9BURK rbh
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_981_6
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6135..7331
DNA (1197bp) protein (399aa)
Diguanylate cyclase n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WGH7_BURSC
diguanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_expt_1000_bf_scaffold_981_7
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7577..8788
DNA (1212bp) protein (404aa)
Diguanylate cyclase n=1 Tax=Burkholderia sp. (strain CCGE1002) RepID=D5WGH7_BURSC
Diguanylate cyclase {ECO:0000313|EMBL:GAN45567.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_981_8
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8827..13872)
DNA (5046bp) protein (1682aa)
Uncharacterized protein n=1 Tax=Streptomyces davawensis JCM 4913 RepID=K4R1Y2_9ACTO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCK30286.1}; TaxID=1214101 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
SCNpilot_expt_1000_bf_scaffold_981_9
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13869..15275)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AN34_PELPD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABK98754.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_expt_1000_bf_scaffold_981_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15316..16512
DNA (1197bp) protein (399aa)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=TSAD_BORPD
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_981_11
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16519..17136)
DNA (618bp) protein (206aa)
plsY; 1-acyl glycerol-3-phosphate synthetase subunit; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
glycerol-3-phosphate acyltransferase n=1 Tax=Burkholderia kururiensis RepID=UPI00034D7B64
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
SCNpilot_expt_1000_bf_scaffold_981_12
Burkholderia sp. CCGE1001, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17193..17675)
DNA (483bp) protein (161aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=640510 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. CCGE1001.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YNP0_9BURK
ybaK/ebsC protein
SCNpilot_expt_1000_bf_scaffold_981_13
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17694..18098)
DNA (405bp) protein (135aa)
5-carboxymethyl-2-hydroxymuconate isomerase; K01826 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
5-carboxymethyl-2-hydroxymuconate delta isomerase n=3 Tax=Burkholderia cenocepacia RepID=A0AZZ4_BURCH
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:ACA92438.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia (strain MC0-3).;"
SCNpilot_expt_1000_bf_scaffold_981_14
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18190..18720
DNA (531bp) protein (177aa)
transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035F9300
Transcriptional regulator {ECO:0000313|EMBL:EJZ32829.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_981_15
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18792..19178)
DNA (387bp) protein (129aa)
K(+)/H(+) antiporter subunit G n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2GMR2_9GAMM
K(+)/H(+) antiporter subunit G {ECO:0000313|EMBL:AJD49724.1}; TaxID=391936 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax pacificus W11-5.;"
K(+)/H(+) antiporter subunit G; K05564 multicomponent K+:H+ antiporter subunit G
SCNpilot_expt_1000_bf_scaffold_981_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19175..19453)
DNA (279bp) protein (93aa)
Putative monovalent cation/H+ antiporter subunit F n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T6X5_ALCXX
Cation:proton antiporter {ECO:0000313|EMBL:KIO48422.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phaF; K(+)/H(+) antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F
SCNpilot_expt_1000_bf_scaffold_981_17
Alcanivorax pacificus, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19450..19938)
DNA (489bp) protein (163aa)
Putative monovalent cation/H+ antiporter subunit E n=1 Tax=Alcanivorax pacificus W11-5 RepID=K2G1C6_9GAMM
Putative monovalent cation/H+ antiporter subunit E {ECO:0000313|EMBL:AJD49726.1}; TaxID=391936 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax pacificus W11-5.;"
phaE; multicomponent K+:H+ antiporter subunit E, pH adaptation; K05562 multicomponent K+:H+ antiporter subunit E
SCNpilot_expt_1000_bf_scaffold_981_18
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19935..21593)
DNA (1659bp) protein (553aa)
Cation:proton antiporter n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGB8_9RHIZ
Cation:proton antiporter {ECO:0000313|EMBL:AHB49090.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
putative monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D
SCNpilot_expt_1000_bf_scaffold_981_19
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21593..21931)
DNA (339bp) protein (113aa)
K(+)/H(+) antiporter subunit C (PH adaptation potassium efflux system protein C) n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZX2_BORA1
phaC; putative monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
K(+)/H(+) antiporter subunit C (PH adaptation potassium efflux system protein C) {ECO:0000313|EMBL:CAJ49610.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCNpilot_expt_1000_bf_scaffold_981_20
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21922..23175)
DNA (1254bp) protein (418aa)
PhaAB protein n=1 Tax=Ralstonia sp. PBA RepID=I9W931_9RALS
Monovalent cation:proton antiporter {ECO:0000313|EMBL:KFC75194.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A
SCNpilot_expt_1000_bf_scaffold_981_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23390..24877
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Bordetella pertussis STO1-CHOC-0018 RepID=V9B991_BORPT rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_981_22
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24918..26015
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6YHL3_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO79499.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_981_23
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26020..28761
DNA (2742bp) protein (914aa)
cation-transporting P-type ATPase; K01552 [EC:3.6.3.-]
Putative cation-transporting P-type ATPase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P8W4_AROAE
Putative cation-transporting P-type ATPase {ECO:0000313|EMBL:CAI06245.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCNpilot_expt_1000_bf_scaffold_981_24
bacterium YEK0313, Bacteria

Not on your lists

comp(28806..30161)
DNA (1356bp) protein (452aa)
pyridine nucleotide-disulfide oxidoreductase dimerisation region; K00383 glutathione reductase (NADPH) [EC:1.8.1.7] rbh
glutathione reductase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034D4174 rbh
Glutathione amide reductase {ECO:0000313|EMBL:CEJ15683.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_981_25
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30235..31149)
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47G90_DECAR rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AAZ46141.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
SCNpilot_expt_1000_bf_scaffold_981_26
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31267..31860
DNA (594bp) protein (198aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
FMN-dependent NADH-azoreductase n=1 Tax=Azoarcus sp. KH32C RepID=H0PSG4_9RHOO rbh
NAD(P)H dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_981_27
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31875..32777
DNA (903bp) protein (301aa)
Pirin-related protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJ25_AZOSU rbh
Pirin-like protein; K06911 rbh
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_981_28
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

32811..34067
DNA (1257bp) protein (419aa)
Glycogen debranching enzyme id=3903278 bin=GWC2_Methylomirabilis_70_16 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
neutral invertase rbh
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_expt_1000_bf_scaffold_981_29
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34084..35037)
DNA (954bp) protein (318aa)
tyrosine recombinase XerD n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00037E056D
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
tyrosine recombinase XerD; K04763 integrase/recombinase XerD rbh
SCNpilot_expt_1000_bf_scaffold_981_30
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35034..35660)
DNA (627bp) protein (209aa)
membrane protein n=1 Tax=Cupriavidus sp. WS RepID=UPI0003822AF7
Uncharacterized protein {ECO:0000313|EMBL:EHP42928.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
putative lipoprotein transmembrane (Chalcone isomerase-like)
Displaying items 1-30 of 34 in total

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