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SCNpilot_expt_1000_bf_scaffold_988

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_988_1
unknown

Not on your lists

comp(66..287)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_988_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(287..1609)
DNA (1323bp) protein (441aa)
Site-specific recombinase, phage integrase family n=7 Tax=Escherichia coli RepID=E9UHB5_ECOLX rbh
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:ESD43819.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
integrase rbh
SCNpilot_expt_1000_bf_scaffold_988_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1882..2295
DNA (414bp) protein (138aa)
Hypothetical membrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AGW1_9PROT
hypothetical membrane protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAN35271.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_988_4
uncultured proteobacterium, Proteobacteria, Bacteria

Not on your lists

comp(2310..3575)
DNA (1266bp) protein (422aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=153809 species="Bacteria; Proteobacteria; environmental samples.;" source="uncultured proteobacterium.;"
lysC; Aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=uncultured proteobacterium RepID=R4MR25_9PROT rbh
SCNpilot_expt_1000_bf_scaffold_988_5
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3688..5127)
DNA (1440bp) protein (480aa)
mesJ; cell cycle protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9AHN9_BURM1
SCNpilot_expt_1000_bf_scaffold_988_6
uncultured proteobacterium, Proteobacteria, Bacteria

Not on your lists

comp(5096..6064)
DNA (969bp) protein (323aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=153809 species="Bacteria; Proteobacteria; environmental samples.;" source="uncultured proteobacterium.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=uncultured proteobacterium RepID=R4MXJ9_9PROT rbh
acetyl-coenzyme A carboxyl transferase alpha chain rbh
SCNpilot_expt_1000_bf_scaffold_988_7
uncultured proteobacterium, Proteobacteria, Bacteria

Not on your lists

comp(6134..7579)
DNA (1446bp) protein (482aa)
Cysteine--tRNA ligase {ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|SAAS:SAAS00043714};; Flags: Fragment;; TaxID=153809 species="Bacteria; Proteobacteria; environmental samples.;" source="uncultured proteobacterium.;"
cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteinyl-tRNA synthetase (Fragment) n=1 Tax=uncultured proteobacterium RepID=R4MZI4_9PROT rbh
SCNpilot_expt_1000_bf_scaffold_988_8
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7658..8371
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PT01_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AHB06454.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
tetratricopeptide tpr_1 repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_988_9
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8427..9041
DNA (615bp) protein (205aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
peptidyl-prolyl cis-trans isomerase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000376F100
cyclophilin type peptidyl-prolyl cis-trans isomerase
SCNpilot_expt_1000_bf_scaffold_988_10
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9108..9923
DNA (816bp) protein (272aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylglucosamine diphosphatase {ECO:0000256|HAMAP-Rule:MF_00575}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-); K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RV33_9BURK
SCNpilot_expt_1000_bf_scaffold_988_11
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9946..10689)
DNA (744bp) protein (248aa)
Serine acetyltransferase n=1 Tax=Azoarcus sp. KH32C RepID=H0PU06_9RHOO
cysE; O-acetylserine synthase
O-acetylserine synthase {ECO:0000313|EMBL:BAL25124.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_988_12
Burkholderia pyrrocinia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10733..11545)
DNA (813bp) protein (271aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=60550 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia pyrrocinia (Pseudomonas pyrrocinia).;"
TrmH family RNA methyltransferase; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-]
RNA methyltransferase, TrmH family, group 1 n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YI89_9BURK
SCNpilot_expt_1000_bf_scaffold_988_13
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11619..12446
DNA (828bp) protein (276aa)
inositol-phosphate phosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] rbh
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00035EB955
Inositol monophosphatase {ECO:0000313|EMBL:KIF80762.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
SCNpilot_expt_1000_bf_scaffold_988_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12518..13468)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000379A3B7
Zn-dependent hydrolase rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_988_15
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13452..14327)
DNA (876bp) protein (292aa)
NUDIX hydrolase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VQS3_POLNA
NUDIX hydrolase
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_expt_1000_bf_scaffold_988_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14779..15189
DNA (411bp) protein (137aa)
Regulator of nucleoside diphosphate kinase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MMS3_9BURK
Variovorax paradoxus strain MEDvA23 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30908.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
regulator of nucleoside diphosphate kinase; K06140 regulator of nucleoside diphosphate kinase
SCNpilot_expt_1000_bf_scaffold_988_17
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15325..16605
DNA (1281bp) protein (427aa)
Sulfide-quinone oxidoreductase n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0LAF5_MAGSM rbh
sulfide-quinone reductase rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_988_18
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16728..18119
DNA (1392bp) protein (464aa)
Putative transcriptional regulator n=1 Tax=uncultured bacterium 9F08 RepID=D2XIS5_9BACT rbh
sigma54 specific transcriptional regulator
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_988_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18116..18673
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WE38_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97729.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_988_20
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18693..19592
DNA (900bp) protein (300aa)
alpha/beta hydrolase fold protein; K01561 haloacetate dehalogenase [EC:3.8.1.3]
alpha/beta hydrolase n=1 Tax=Acidovorax radicis RepID=UPI00023782CD
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJE54892.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_expt_1000_bf_scaffold_988_21
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19757..22558
DNA (2802bp) protein (934aa)
DNA mismatch repair protein MutS n=1 Tax=Burkholderia cenocepacia PC184 RepID=A2VX63_9BURK
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=350702 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia PC184.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_988_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22664..23776)
DNA (1113bp) protein (371aa)
cytochrome oxidase assembly protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E27611
ctaA; putative cytochrome aa3 oxidase assembly protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_988_23
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23773..25197)
DNA (1425bp) protein (475aa)
cytochrome c oxidase, subunit i id=12553488 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cytochrome c oxidase, subunit i
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_988_24
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25194..25700)
DNA (507bp) protein (169aa)
hypothetical protein id=12553489 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_988_25
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25693..27267)
DNA (1575bp) protein (525aa)
Methyl-viologen-reducing hydrogenase delta subunit n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSD8_ACCPU
methyl-viologen-reducing hydrogenase subunit delta
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_988_26
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27319..28155)
DNA (837bp) protein (279aa)
Electron transport protein SCO1/SenC n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RV11_ACCPU
electron transport protein SCO1/SenC; K07152
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_988_27
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28163..29863)
DNA (1701bp) protein (567aa)
cytochrome-c oxidase (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome-c oxidase n=2 Tax=Alicycliphilus denitrificans RepID=E8TQH0_ALIDB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_988_28
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29877..30416)
DNA (540bp) protein (180aa)
cytochrome c oxidase subunit ii; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit II n=2 Tax=Alicycliphilus denitrificans RepID=E8TQG9_ALIDB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_988_29
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30441..30626)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QB36_9RHOB
hypothetical protein
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_988_30
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30909..32831
DNA (1923bp) protein (641aa)
Oxidoreductase FAD-binding domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSD5_ACCPU rbh
Oxidoreductase FAD-binding domain-containing protein rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
Displaying items 1-30 of 60 in total

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