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SCNpilot_expt_1000_bf_scaffold_1057

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1057_1
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


229..495
DNA (267bp) protein (89aa)
30S ribosomal protein S16 n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DCU1_9BURK
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
SCNpilot_expt_1000_bf_scaffold_1057_2
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

632..1168
DNA (537bp) protein (179aa)
ribosome maturation factor RimM n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00031C9AED
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM
SCNpilot_expt_1000_bf_scaffold_1057_3
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1183..1944
DNA (762bp) protein (254aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase TrmD (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GWQ9_9BURK
SCNpilot_expt_1000_bf_scaffold_1057_4
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2071..2457
DNA (387bp) protein (129aa)
50S ribosomal protein L19 n=2 Tax=Herbaspirillum RepID=D8IPX8_HERSS
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
SCNpilot_expt_1000_bf_scaffold_1057_5
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2637..3401
DNA (765bp) protein (255aa)
NTP pyrophosphohydrolase n=1 Tax=Burkholderia sp. BT03 RepID=J2Q930_9BURK
NUDIX hydrolase {ECO:0000313|EMBL:EUC17281.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_1057_6
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3419..4390
DNA (972bp) protein (324aa)
Cobalamin biosynthesis protein CobD n=1 Tax=Ralstonia sp. PBA RepID=I9KXS2_9RALS
cobD/Cbib family protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_1000_bf_scaffold_1057_7
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4484..5413)
DNA (930bp) protein (310aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
rsgA; ribosome-associated gtpase (EC:3.6.1.-); K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXC9_9BURK
SCNpilot_expt_1000_bf_scaffold_1057_8

Not on your lists

comp(5417..5770)
DNA (354bp) protein (118aa)
Putative pterin-4-alpha-carbinolamine dehydratase (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD) {ECO:0000313|EMBL:CBH95607.1}; EC=4.2.1.96 {ECO:0000313|EMBL:CBH95607.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative pterin-4-alpha-carbinolamine dehydratase (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD) (EC:4.2.1.96)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000365BD27
SCNpilot_expt_1000_bf_scaffold_1057_9
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5809..7095)
DNA (1287bp) protein (429aa)
Ste24 endopeptidase (EC:3.4.24.84); K06013 STE24 endopeptidase [EC:3.4.24.84]
Peptidase M48 n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2JED3_9BURK
Peptidase M48 {ECO:0000313|EMBL:ESJ23749.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
SCNpilot_expt_1000_bf_scaffold_1057_10
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7136..7756
DNA (621bp) protein (207aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
orn; oligoribonuclease (EC:3.1.-.-); K13288 oligoribonuclease [EC:3.1.-.-]
oligoribonuclease n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003150F4B
SCNpilot_expt_1000_bf_scaffold_1057_11
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7770..9188)
DNA (1419bp) protein (473aa)
Na+ driven multidrug efflux pump n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K927_CUPNH rbh
h16_A2399; Na+ driven multidrug efflux pump; K03327 multidrug resistance protein, MATE family rbh
Na+ driven multidrug efflux pump {ECO:0000313|EMBL:CAJ93494.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
SCNpilot_expt_1000_bf_scaffold_1057_12
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9185..10930)
DNA (1746bp) protein (582aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G309_HERAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL60896.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_expt_1000_bf_scaffold_1057_13
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11027..11278)
DNA (252bp) protein (84aa)
50S ribosomal protein L31 type B n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RXC5_9BURK
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
rpmE2; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31
SCNpilot_expt_1000_bf_scaffold_1057_14
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11393..12655)
DNA (1263bp) protein (421aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
Transcription termination factor Rho n=4 Tax=Burkholderia ambifaria RepID=B1YRF1_BURA4
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
SCNpilot_expt_1000_bf_scaffold_1057_15
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12887..13207)
DNA (321bp) protein (107aa)
Thioredoxin n=5 Tax=Ralstonia RepID=B2U9S2_RALPJ
thioredoxin; K03671 thioredoxin 1
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
SCNpilot_expt_1000_bf_scaffold_1057_16
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13444..15165
DNA (1722bp) protein (574aa)
DNA polymerase III subunit tau {ECO:0000313|EMBL:EXI80188.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EXI80188.1};; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III subunit gamma/tau n=1 Tax=Methyloversatilis sp. NVD RepID=UPI000379744F rbh
SCNpilot_expt_1000_bf_scaffold_1057_17
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15162..15488
DNA (327bp) protein (109aa)
Nucleoid-associated protein BC1002_1396 n=2 Tax=Burkholderia RepID=D5W7S7_BURSC
hypothetical protein; K09747 hypothetical protein
Nucleoid-associated protein BC1002_1396 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_expt_1000_bf_scaffold_1057_18
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15495..16109
DNA (615bp) protein (205aa)
recombinase RecR n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000300155C
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
recR; recombination protein RecR; K06187 recombination protein RecR
SCNpilot_expt_1000_bf_scaffold_1057_19
unknown

Not on your lists

comp(16140..16304)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1057_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16484..17716
DNA (1233bp) protein (411aa)
formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] rbh
CoA transferase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036A172F rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_1057_21
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17736..18131)
DNA (396bp) protein (132aa)
PilT protein domain protein n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BCN4_CHLPD
PilT domain-containing protein; K07062
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_expt_1000_bf_scaffold_1057_22
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18131..18364)
DNA (234bp) protein (78aa)
Virulence associated protein B n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QL12_CHLP8
virulence associated protein B
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_expt_1000_bf_scaffold_1057_23
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18597..19619
DNA (1023bp) protein (341aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000367CB9A
putative signal peptide protein; K02051 NitT/TauT family transport system substrate-binding protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_1000_bf_scaffold_1057_24
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19642..20547
DNA (906bp) protein (302aa)
mannosyltransferase n=1 Tax=Cupriavidus sp. WS RepID=UPI00037EA030 rbh
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
ABC transporter related protein {ECO:0000313|EMBL:AAZ61468.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_1000_bf_scaffold_1057_25
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20544..21536
DNA (993bp) protein (331aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JG64_BURP8
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACC70146.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_expt_1000_bf_scaffold_1057_26
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21600..22388
DNA (789bp) protein (263aa)
Uncharacterized protein {ECO:0000313|EMBL:BAQ67496.1}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
SCNpilot_expt_1000_bf_scaffold_1057_27
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22747..23439
DNA (693bp) protein (231aa)
hypothetical protein (EC:5.3.4.1); K01829 protein disulfide-isomerase [EC:5.3.4.1]
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82WY5_NITEU
Uncharacterized protein {ECO:0000313|EMBL:CAD84427.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_expt_1000_bf_scaffold_1057_28
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23614..24369)
DNA (756bp) protein (252aa)
hypothetical protein id=12493066 bin=THIO_HI species=Methylomonas sp. MK1 genus=Methylomonas taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_1057_29
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24853..26094
DNA (1242bp) protein (414aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
carbamoyl-phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=1 Tax=Burkholderia sp. SJ98 RepID=K8RSG1_9BURK
SCNpilot_expt_1000_bf_scaffold_1057_30
GWE2_Gallionellales_58_10_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26272..26622)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Akkermansia muciniphila CAG:154 RepID=R6IZF9_9BACT
Tax=GWE2_Gallionellales_58_10_curated
Displaying items 1-30 of 38 in total

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