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SCNpilot_expt_1000_bf_scaffold_199

Search features with annotation key words

Displaying items 1-30 of 365 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_199_1
unknown

Not on your lists

comp(3..122)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_199_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136..906)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNP5_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29150.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
enoyl-CoA hydratase rbh
SCNpilot_expt_1000_bf_scaffold_199_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(968..3100)
DNA (2133bp) protein (711aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ81_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29151.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
acyl-CoA synthetase (NDP forming) rbh
SCNpilot_expt_1000_bf_scaffold_199_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3191..4414)
DNA (1224bp) protein (408aa)
glutaryl-CoA dehydrogenase; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NEW3_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29152.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_199_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4468..5502)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSF8_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29153.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ABC transporter periplasmic substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_199_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5567..6580)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NL26_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS29154.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
periplasmic subtsrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_199_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6687..7889)
DNA (1203bp) protein (401aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8R0_9BRAD rbh
3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase {ECO:0000313|EMBL:CEG09057.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_199_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7926..9449)
DNA (1524bp) protein (508aa)
paaH; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Q9_9BRAD rbh
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:EFI50547.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_199_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9697..10593
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Q8_9BRAD rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI50546.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_199_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10880..12160
DNA (1281bp) protein (427aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BQ55_OLICM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI05864.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_199_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12444..12731
DNA (288bp) protein (96aa)
putative 6-pyruvoyl tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IT94_RHOP2
SCNpilot_expt_1000_bf_scaffold_199_12
unknown

Not on your lists

comp(12847..12984)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_199_13
unknown

Not on your lists

comp(12994..13164)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_199_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14062..15510
DNA (1449bp) protein (483aa)
UPI0003CFA841 related cluster n=1 Tax=unknown RepID=UPI0003CFA841 rbh
Uncharacterized protein {ECO:0000313|EMBL:KEC80212.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
AraC family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_199_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15969..17195
DNA (1227bp) protein (409aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJL5_OLICO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI05354.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_199_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17208..19184
DNA (1977bp) protein (659aa)
GGDEF/EAL domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJL4_OLICO rbh
diguanylate cyclase rbh
GGDEF/EAL domain protein {ECO:0000313|EMBL:AEI05355.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_199_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19301..19870)
DNA (570bp) protein (190aa)
Cytochrome c class I n=1 Tax=Afipia sp. 1NLS2 RepID=D6V770_9BRAD rbh
Cytochrome c class I {ECO:0000313|EMBL:EFI51080.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
cytochrome c class I
SCNpilot_expt_1000_bf_scaffold_199_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19851..21146)
DNA (1296bp) protein (432aa)
Oxidoreductase molybdopterin binding n=1 Tax=Afipia sp. 1NLS2 RepID=D6V769_9BRAD rbh
Oxidoreductase molybdopterin binding {ECO:0000313|EMBL:EFI51079.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
molybdopterin binding oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_199_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21269..22282
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIE0_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS28821.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_199_20
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22364..22576
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PUP7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW13397.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_199_21
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22595..23833)
DNA (1239bp) protein (413aa)
Putative oxalate/formate antiporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QRM3_9BRAD
Putative oxalate/formate antiporter {ECO:0000313|EMBL:EGP06234.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_199_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24040..26271
DNA (2232bp) protein (744aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEJ7_9BRAD
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:EKS36753.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA rbh
SCNpilot_expt_1000_bf_scaffold_199_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26548..26760
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLD0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29234.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_199_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27122..28165)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NP25_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29235.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_199_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28165..28710)
DNA (546bp) protein (182aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJJ7_AFIFE
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS29236.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
FecI-like sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_199_26
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28922..29338)
DNA (417bp) protein (139aa)
Flagellar export protein FliJ n=2 Tax=Oligotropha carboxidovorans RepID=B6JIH1_OLICO
fliJ; flagellar export protein FliJ
Putative flagellar export protein FliJ {ECO:0000313|EMBL:AEI05711.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_199_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29448..30773)
DNA (1326bp) protein (442aa)
fliI; flagellum-specific ATP synthase (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14] rbh
ATP synthase n=1 Tax=Afipia birgiae RepID=UPI000307DECF
Flagellum-specific ATP synthase FliI {ECO:0000313|EMBL:EGP06241.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_199_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31441..31863
DNA (423bp) protein (141aa)
Two-component cell cycle transcriptional regulator ctrA, winged helix family n=1 Tax=Rhodovulum sp. PH10 RepID=J6IZY6_9RHOB
cell cycle transcriptional regulator CtrA; K13584 two-component system, cell cycle response regulator CtrA
Cell cycle response regulator CtrA {ECO:0000313|EMBL:CEG09162.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_199_29
R_Alphaproteobacteria_46_13, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32084..33274)
DNA (1191bp) protein (397aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IU93_RHOP2
methyl-accepting chemotaxis sensory transducer
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_46_13_curated
SCNpilot_expt_1000_bf_scaffold_199_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33578..34456)
DNA (879bp) protein (293aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
cheR; chemotaxis protein methyltransferase 1 (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] rbh
Chemotaxis protein methyltransferase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NP30_AFIFE rbh
Displaying items 1-30 of 365 in total

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