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SCNpilot_expt_1000_bf_scaffold_378

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Displaying items 1-30 of 298 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_378_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..270)
DNA (270bp) protein (90aa)
Flagellar hook protein FlgE n=2 Tax=Bradyrhizobiaceae RepID=F7QQC4_9BRAD
Flagellar hook-basal body protein {ECO:0000313|EMBL:EKS37829.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
flagellar basal body FlaE domain-containing protein; K02390 flagellar hook protein FlgE
SCNpilot_expt_1000_bf_scaffold_378_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(442..945)
DNA (504bp) protein (168aa)
msrB; methionine sulfoxide reductase B (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Methionine-R-sulfoxide reductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2G6_9BRAD
Peptide methionine sulfoxide reductase MsrB {ECO:0000313|EMBL:CEG07390.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_378_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1064..2503)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NA89_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS27537.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_378_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2606..3136
DNA (531bp) protein (177aa)
phosphoglycerate mutase; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NF14_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27536.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_378_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3243..3677
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIY6_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27535.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_378_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3732..4238)
DNA (507bp) protein (169aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=B6JBF3_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07311.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_378_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4628..5668
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2H1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI52151.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein; K07027 rbh
SCNpilot_expt_1000_bf_scaffold_378_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5765..7720
DNA (1956bp) protein (652aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2H2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI52152.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_378_9
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7799..8341
DNA (543bp) protein (181aa)
Bll6650 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89FP9_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KJC38155.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_378_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8441..9469)
DNA (1029bp) protein (343aa)
Ferredoxin--NADP reductase {ECO:0000256|HAMAP-Rule:MF_01685}; Short=FNR {ECO:0000256|HAMAP-Rule:MF_01685};; Short=Fd-NADP(+) reductase {ECO:0000256|HAMAP-Rule:MF_01685};; EC=1.18.1.2 {ECO:0000256|HAMAP-Rule:MF_01685};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ferredoxin--NADP reductase (EC:1.18.1.2); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
Ferredoxin--NADP reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P178_9BRAD
SCNpilot_expt_1000_bf_scaffold_378_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9713..10033)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6I4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36344.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ferredoxin, adrenodoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_1000_bf_scaffold_378_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10128..10511)
DNA (384bp) protein (128aa)
Hpt protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2H5_9BRAD
Hpt domain protein {ECO:0000313|EMBL:CEG07382.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
two-component hybrid sensor and regulator
SCNpilot_expt_1000_bf_scaffold_378_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10878..15716
DNA (4839bp) protein (1613aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P4D9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36346.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_378_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15821..16765)
DNA (945bp) protein (315aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2] rbh
Glucokinase {ECO:0000255|HAMAP-Rule:MF_00524}; EC=2.7.1.2 {ECO:0000255|HAMAP-Rule:MF_00524};; Glucose kinase {ECO:0000255|HAMAP-Rule:MF_00524}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Glucokinase n=2 Tax=Nitrobacter hamburgensis RepID=GLK_NITHX rbh
SCNpilot_expt_1000_bf_scaffold_378_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16777..17646)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NF06_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS27526.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
putative ABC transporter substrate-binding protein; K02067 putative ABC transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_378_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17662..18432)
DNA (771bp) protein (257aa)
Methionine ABC transporter ATP-binding protein n=2 Tax=Bradyrhizobiaceae RepID=F7QQE5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35589.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ABC transporter ATP-binding protein; K02065 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_378_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18441..19586)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGG9_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS27524.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
putative ABC transporter permease; K02066 putative ABC transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_378_18
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19709..20701
DNA (993bp) protein (331aa)
mandelate racemase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037B1A37
Bradyrhizobium elkanii strain UASWS1015 Contig179, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47714.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
mandelate racemase/muconate lactonizing protein
SCNpilot_expt_1000_bf_scaffold_378_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20708..21895)
DNA (1188bp) protein (396aa)
3-phenylpropionic acid transporter n=1 Tax=Afipia birgiae RepID=UPI0002DE84EA rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36351.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
major facilitator transporter; K05820 MFS transporter, PPP family, 3-phenylpropionic acid transporter
SCNpilot_expt_1000_bf_scaffold_378_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22035..23162
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QQE9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06563.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_378_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23186..24169)
DNA (984bp) protein (328aa)
pyridoxal-5'-phosphate-dependent enzyme subunit beta; K01754 threonine dehydratase [EC:4.3.1.19]
serine/threonine dehydratase n=1 Tax=Afipia birgiae RepID=UPI0002E837A6
Uncharacterized protein {ECO:0000313|EMBL:EKS36353.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_378_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24202..25272)
DNA (1071bp) protein (357aa)
Glycosyl transferase group 1 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2I4_9BRAD rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:EFI52164.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
group 1 glycosyl transferase rbh
SCNpilot_expt_1000_bf_scaffold_378_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25272..26072)
DNA (801bp) protein (267aa)
Metallophosphoesterase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2I5_9BRAD
UDP-2,3-diacylglucosamine hydrolase {ECO:0000313|EMBL:CEG07368.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
putative metallophosphoesterase protein rbh
SCNpilot_expt_1000_bf_scaffold_378_24
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26151..26807)
DNA (657bp) protein (219aa)
phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NZ32_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35597.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_378_25
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26924..27730)
DNA (807bp) protein (269aa)
thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase ThiD (EC:2.7.1.49 2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] rbh
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase ThiD {ECO:0000313|EMBL:AEI07328.1}; EC=2.7.1.49 {ECO:0000313|EMBL:AEI07328.1};; EC=2.7.4.7 {ECO:0000313|EMBL:AEI07328.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase ThiD n=2 Tax=Oligotropha carboxidovorans RepID=B6JBD4_OLICO rbh
SCNpilot_expt_1000_bf_scaffold_378_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27879..28115
DNA (237bp) protein (79aa)
Putative transcriptional regulator n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TGH9_9BRAD
AsnC family transcriptional regulator {ECO:0000313|EMBL:KIZ36607.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_378_27
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28132..29043)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P2A6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35601.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative diheme cytochrome c-553 rbh
SCNpilot_expt_1000_bf_scaffold_378_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29180..29623)
DNA (444bp) protein (148aa)
Cytochrome c, class II n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07RM3_RHOP5
cytochrome c, class II
Cytochrome c, class II {ECO:0000313|EMBL:ABJ05411.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_378_29
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29829..31358)
DNA (1530bp) protein (510aa)
Integral membrane protein MviN n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2I9_9BRAD rbh
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
mviN; integral membrane protein MviN; K03980 virulence factor rbh
SCNpilot_expt_1000_bf_scaffold_378_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31402..32553)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9U5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36365.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
DegT/DnrJ/EryC1/StrS aminotransferase rbh
Displaying items 1-30 of 298 in total

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