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SCNpilot_expt_1000_bf_scaffold_486

Search features with annotation key words

Displaying items 1-30 of 134 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_486_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_486_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

332..1114
DNA (783bp) protein (261aa)
pcaD; B-ketoadipate enol-lactone hydrolase; K01055 3-oxoadipate enol-lactonase [EC:3.1.1.24]
3-oxoadipate enol-lactonase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCY9_9BRAD
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:EKS36193.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_486_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1133..1651)
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C PF5_9BRAD">RepID=F7QPF5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06926.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_486_4
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1788..4007)
DNA (2220bp) protein (740aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003761FAB
Uncharacterized protein {ECO:0000313|EMBL:EZH77438.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
siderophore receptor protein; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_1000_bf_scaffold_486_5
unknown

Not on your lists

comp(4348..4512)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_486_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4784..5698
DNA (915bp) protein (305aa)
Inner-membrane translocator n=1 Tax=Afipia sp. 1NLS2 RepID=D6V253_9BRAD rbh
LIV-I protein H {ECO:0000313|EMBL:CEG07512.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
livH2; ABC transporter, high-affinity branched-chain amino acid transport system permease protein LivH; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_486_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5708..7042
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCZ5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36198.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
livM; ABC transporter, high-affinity branched-chain amino acid transport system permease protein LivM; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_486_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7039..7878
DNA (840bp) protein (280aa)
ABC transporter, high-affinity branched-chain amino acid transport ATP-binding protein LivG n=2 Tax=Oligotropha carboxidovorans RepID=B6JDW6_OLICO rbh
branched-chain amino acid transport ATP-binding proteinlivG (LIV-I protein G); K01995 branched-chain amino acid transport system ATP-binding protein rbh
ABC transporter, high-affinity branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:AEI07205.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_486_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7875..8615
DNA (741bp) protein (247aa)
ABC transporter related protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V256_9BRAD rbh
ABC transporter related protein {ECO:0000313|EMBL:EFI52036.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
livF4; branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_486_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8615..8986
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3Z4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36201.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_486_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9066..10181
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0S2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36202.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_486_12
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10334..11068)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PA22_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37634.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
cytochrome c biogenesis protein, transmembrane region; K06196 cytochrome c-type biogenesis protein rbh
SCNpilot_expt_1000_bf_scaffold_486_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11212..12207
DNA (996bp) protein (332aa)
Peptidase S58, DmpA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QK48_NITHX
peptidase S58, DmpA
Peptidase S58, DmpA {ECO:0000313|EMBL:ABE63399.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_486_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12272..12493
DNA (222bp) protein (74aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BKA5_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07216.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_486_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12646..12903
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NAL1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:CEG07498.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_486_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12922..14115)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P401_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS36206.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_486_17
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14248..15009)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPG6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06937.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_486_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15298..15999
DNA (702bp) protein (234aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
rpe; ribulose-phosphate 3-epimerase Rpe (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] rbh
Ribulose-phosphate 3-epimerase n=2 Tax=Bradyrhizobiaceae RepID=F7QPG7_9BRAD
SCNpilot_expt_1000_bf_scaffold_486_19
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15996..17444)
DNA (1449bp) protein (483aa)
Serine/threonine kinase n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G4U6_9BRAD rbh
serine/threonine kinase rbh
Serine/threonine kinase {ECO:0000313|EMBL:BAL75783.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_1000_bf_scaffold_486_20
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17463..18227)
DNA (765bp) protein (255aa)
N-ethylmaleimide reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IT96_9BRAD rbh
Metallophosphoesterase {ECO:0000313|EMBL:KJC37010.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_486_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18419..19729
DNA (1311bp) protein (437aa)
purB; adenylosuccinate lyase PurB (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2] rbh
Adenylosuccinate lyase PurB {ECO:0000313|EMBL:AEI07220.1}; EC=4.3.2.2 {ECO:0000313|EMBL:AEI07220.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Adenylosuccinate lyase n=2 Tax=Oligotropha carboxidovorans RepID=B6JDV0_OLICO rbh
SCNpilot_expt_1000_bf_scaffold_486_22
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19746..20303
DNA (558bp) protein (186aa)
Hydrolase, Alpha/Beta family n=3 Tax=Oligotropha carboxidovorans RepID=B6JDU9_OLICO rbh
hypothetical protein; K07002 rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI07221.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_486_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20966..21661)
DNA (696bp) protein (232aa)
Cytochrome B561 n=2 Tax=Oligotropha carboxidovorans RepID=B6JDU8_OLICO
cytochrome b561
Uncharacterized protein {ECO:0000313|EMBL:EKS27630.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_expt_1000_bf_scaffold_486_24
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21976..22476
DNA (501bp) protein (167aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
murI; glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YME5_9BRAD
SCNpilot_expt_1000_bf_scaffold_486_25
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22873..23415
DNA (543bp) protein (181aa)
30S ribosomal protein S4 n=2 Tax=Oligotropha carboxidovorans RepID=RS4_OLICO
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
30S ribosomal protein S4 {ECO:0000255|HAMAP-Rule:MF_01306}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_486_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23573..23908)
DNA (336bp) protein (112aa)
Glutaredoxin n=1 Tax=Afipia felis ATCC 53690 RepID=K8NF93_AFIFE
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glutaredoxin-like protein; K07390 monothiol glutaredoxin
SCNpilot_expt_1000_bf_scaffold_486_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24214..25461
DNA (1248bp) protein (416aa)
TIGR03440 family protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ75_AFIFE rbh
Iron(II)-dependent oxidoreductase EgtB {ECO:0000313|EMBL:CEG07487.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_486_28
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25512..26483
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPI3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06954.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_486_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26494..27678)
DNA (1185bp) protein (395aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI0003619CAB
Uncharacterized protein {ECO:0000313|EMBL:EKS36223.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
low temperature requirement A
SCNpilot_expt_1000_bf_scaffold_486_30
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27695..27931)
DNA (237bp) protein (79aa)
BolA family protein n=3 Tax=Oligotropha carboxidovorans RepID=B6JDU2_OLICO
BolA-like family protein
BolA-like family protein {ECO:0000313|EMBL:AEI07228.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying items 1-30 of 134 in total

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