ggKbase home page

SCNpilot_expt_1000_bf_scaffold_511

Search features with annotation key words

Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_511_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(471..929)
DNA (459bp) protein (153aa)
arsenate reductase (azurin) (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1]
Arsenate reductase (Azurin) {ECO:0000313|EMBL:ABE65011.1}; EC=1.20.9.1 {ECO:0000313|EMBL:ABE65011.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Arsenate reductase (Azurin) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFI6_NITHX
SCNpilot_expt_1000_bf_scaffold_511_2
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1088..1738
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EH71_BRASB
Nickel transporter {ECO:0000313|EMBL:KJC60495.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein; K08970 nickel/cobalt exporter
SCNpilot_expt_1000_bf_scaffold_511_3
unknown

Not on your lists

1793..2227
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000364B6B4
SCNpilot_expt_1000_bf_scaffold_511_4
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2279..3499
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUL7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EAQ36319.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_511_5
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3450..3938
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUL7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36319.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_511_6
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3947..7066
DNA (3120bp) protein (1040aa)
Heavy metal efflux pump CzcA n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUM5_9BRAD rbh
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:EAQ36318.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
CzcA family heavy metal efflux pump; K07239 heavy-metal exporter, HME family rbh
SCNpilot_expt_1000_bf_scaffold_511_7
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7090..7464
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUM4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36317.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_511_8
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7608..8945
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F4C738 rbh
Probable NreB protein {ECO:0000313|EMBL:EAQ36316.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_511_9
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9077..9481
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QSR0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG62816.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_511_10
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9648..10475
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QU17_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EIG63273.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
sodM; superoxide dismutase SodM-like protein rbh
SCNpilot_expt_1000_bf_scaffold_511_11
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10495..11082
DNA (588bp) protein (196aa)
manganese and iron superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] rbh
Chromium (VI) response protein n=1 Tax=Ochrobactrum anthropi RepID=A1Z268_OCHAN rbh
Chromium (VI) response protein {ECO:0000313|EMBL:ABM53865.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_511_12
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11119..11991
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D2Q9_BRAJP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL11920.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_1000_bf_scaffold_511_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12044..13447
DNA (1404bp) protein (468aa)
chromate transporter n=1 Tax=Afipia birgiae RepID=UPI0002FBDFC8 rbh
Chromate ion transporter (CHR) family chromate transporter {ECO:0000313|EMBL:EKS34460.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
chromate transport protein; K07240 chromate transporter rbh
SCNpilot_expt_1000_bf_scaffold_511_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13611..14663
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM64_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE62683.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_511_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14686..15477
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM65_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE62682.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_511_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15763..17160)
DNA (1398bp) protein (466aa)
Putative ATPase (AAA+ superfamily) n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WGV5_RHILT rbh
Putative ATPase (AAA+ superfamily) {ECO:0000313|EMBL:EJC84668.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
hypothetical protein; K06921 rbh
SCNpilot_expt_1000_bf_scaffold_511_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17430..18077
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B43F40
Uncharacterized protein {ECO:0000313|EMBL:EUB97527.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_511_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18148..18483
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07NV5_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ06379.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_511_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18516..20504
DNA (1989bp) protein (663aa)
AAA ATPase central domain protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VQ04_RHOPX rbh
AAA ATPase rbh
AAA ATPase central domain protein {ECO:0000313|EMBL:ADU43681.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_expt_1000_bf_scaffold_511_20
unknown

Not on your lists

20653..20763
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_511_21
unknown

Not on your lists

20836..20970
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_511_22

Not on your lists

21258..21848
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036AD29E
Uncharacterized protein {ECO:0000313|EMBL:KKN91984.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_511_23

Not on your lists

21862..24048
DNA (2187bp) protein (729aa)
hypothetical protein, partial n=1 Tax=Afipia birgiae RepID=UPI000374FCB3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN91985.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
integrase catalytic subunit; K07497 putative transposase
SCNpilot_expt_1000_bf_scaffold_511_24

Not on your lists

24061..25152
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DC9E2E
Uncharacterized protein {ECO:0000313|EMBL:KKN91986.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TniB family protein
SCNpilot_expt_1000_bf_scaffold_511_25

Not on your lists

25149..26732
DNA (1584bp) protein (528aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037553CE
Uncharacterized protein {ECO:0000313|EMBL:KKN91987.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_511_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27455..28666
DNA (1212bp) protein (404aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX26_RHOP2 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD07234.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_511_27
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28650..28859)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C9S8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ80215.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_511_28
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28856..29212)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICM9_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA90054.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_511_29
unknown

Not on your lists

comp(29373..30059)
DNA (687bp) protein (229aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_511_30
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30375..33728)
DNA (3354bp) protein (1118aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDD1_BEII9 rbh
hypothetical protein rbh
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ACB93983.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Displaying items 1-30 of 142 in total

View Taxonomy