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SCNpilot_expt_1000_bf_scaffold_691

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Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_691_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..580)
DNA (579bp) protein (193aa)
60 kDa chaperonin n=2 Tax=Bradyrhizobiaceae RepID=F7QPC4_9BRAD
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
groL2; 60 kDa chaperonin 2; K04077 chaperonin GroEL
SCNpilot_expt_1000_bf_scaffold_691_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(719..1033)
DNA (315bp) protein (105aa)
10 kDa chaperonin n=2 Tax=Bradyrhizobiaceae RepID=F7QPC3_9BRAD
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
groES2; co-chaperonin GroES; K04078 chaperonin GroES
SCNpilot_expt_1000_bf_scaffold_691_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1417..1716
DNA (300bp) protein (100aa)
Usg family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAM4_9BRAD
Usg family protein {ECO:0000313|EMBL:EFI50518.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Usg family protein
SCNpilot_expt_1000_bf_scaffold_691_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2039..2590
DNA (552bp) protein (184aa)
Sensory box histidine kinase/response regulator n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLB7_9BRAD
Sensory box histidine kinase/response regulator {ECO:0000313|EMBL:EGP07770.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
sensor hybrid histidine kinase with multiple PAS/PAC, GAF and response regulator receiver domains
SCNpilot_expt_1000_bf_scaffold_691_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2663..3415)
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Oligotropha carboxidovorans RepID=B6JHX0_OLICO rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase family {ECO:0000313|EMBL:AEI07181.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_691_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3557..4303)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PDA7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS37590.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K07395 putative proteasome-type protease
SCNpilot_expt_1000_bf_scaffold_691_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4533..5270
DNA (738bp) protein (246aa)
Competence-damage associated protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JHX2_OLICO rbh
molybdopterin binding protein rbh
Putative molybdopterin binding protein {ECO:0000313|EMBL:AEI07179.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_691_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5477..5983
DNA (507bp) protein (169aa)
gpt; xanthine phosphoribosyltransferase Gpt (EC:2.4.2.22); K00769 xanthine phosphoribosyltransferase [EC:2.4.2.22]
Xanthine phosphoribosyltransferase Gpt {ECO:0000313|EMBL:AEI07178.1}; EC=2.4.2.22 {ECO:0000313|EMBL:AEI07178.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Xanthine phosphoribosyltransferase n=2 Tax=Oligotropha carboxidovorans RepID=B6JHX3_OLICO
SCNpilot_expt_1000_bf_scaffold_691_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6273..6689
DNA (417bp) protein (139aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BJU4_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07174.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_691_10
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6941..8851)
DNA (1911bp) protein (637aa)
histidine kinase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B6C05B rbh
PAS domain S-box {ECO:0000313|EMBL:EHR03955.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
two-component hybrid sensor and regulator rbh
SCNpilot_expt_1000_bf_scaffold_691_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8962..10140)
DNA (1179bp) protein (393aa)
Salicylate hydroxylase {ECO:0000313|EMBL:EGP06871.1}; EC=1.14.13.1 {ECO:0000313|EMBL:EGP06871.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
salicylate 1-monooxygenase; K00480 salicylate hydroxylase [EC:1.14.13.1]
Salicylate hydroxylase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPA0_9BRAD
SCNpilot_expt_1000_bf_scaffold_691_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10160..10405)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07P85_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ06249.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_691_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10808..11878
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5X3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36134.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_691_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11971..12723
DNA (753bp) protein (251aa)
alpha/beta hydrolase n=1 Tax=Afipia birgiae RepID=UPI0002DCA7CC
Uncharacterized protein {ECO:0000313|EMBL:EKS36133.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_691_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12853..13677
DNA (825bp) protein (275aa)
cysE; serine acetyltransferase; K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine O-acetyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAK9_9BRAD rbh
Serine O-acetyltransferase {ECO:0000313|EMBL:EFI50503.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_expt_1000_bf_scaffold_691_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13774..13995
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P4S4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP06866.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_691_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14186..14887)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036141A1
Uncharacterized protein {ECO:0000313|EMBL:EKS36130.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_691_18
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15093..15422
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAK6_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05427.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_691_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15551..16081
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGZ7_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27699.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
transferase
SCNpilot_expt_1000_bf_scaffold_691_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16333..17025)
DNA (693bp) protein (231aa)
MOSC domain containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA75_9BRAD rbh
MOSC domain containing protein {ECO:0000313|EMBL:EFI50369.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_691_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17268..17930)
DNA (663bp) protein (221aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P4S0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37562.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_691_22
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18263..18880)
DNA (618bp) protein (206aa)
Type IV pilus assembly PilZ n=2 Tax=Oligotropha carboxidovorans RepID=B6JHZ3_OLICO rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI07159.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_691_23
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19077..19340
DNA (264bp) protein (88aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAL8_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05008.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_691_24
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19337..19900)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAJ7_9BRAD
PAS domain protein {ECO:0000313|EMBL:CEG07563.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_691_25
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20542..20871
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CZN0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN15944.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
SCNpilot_expt_1000_bf_scaffold_691_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21466..22251
DNA (786bp) protein (262aa)
Rhomboid family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAJ6_9BRAD rbh
Intramembrane serine protease GlpG {ECO:0000313|EMBL:CEG07564.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
rhomboid-like protein rbh
SCNpilot_expt_1000_bf_scaffold_691_27
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22467..22895
DNA (429bp) protein (143aa)
CBS domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JEH5_OLICO
CBS domain-containing protein
CBS domain protein {ECO:0000313|EMBL:AEI07085.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_691_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23030..24076)
DNA (1047bp) protein (349aa)
Patatin n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAJ4_9BRAD rbh
NTE family protein RssA {ECO:0000313|EMBL:CEG07567.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
rssA; NTE family protein RssA; K07001 NTE family protein rbh
SCNpilot_expt_1000_bf_scaffold_691_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24297..25352
DNA (1056bp) protein (352aa)
signal peptide protein n=1 Tax=Afipia birgiae RepID=UPI0002D40F7C
Uncharacterized protein {ECO:0000313|EMBL:EKS36118.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_691_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25643..26533
DNA (891bp) protein (297aa)
Cation diffusion facilitator family transporter n=1 Tax=Afipia felis ATCC 53690 RepID=K8NID4_AFIFE rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EKS28214.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
cation efflux protein rbh
Displaying items 1-30 of 65 in total

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