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SCNpilot_expt_1000_bf_scaffold_489

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_489_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..329
DNA (327bp) protein (109aa)
LysR family transcriptional regulator n=4 Tax=Pseudomonas RepID=I4CQU2_PSEST
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEB84107.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_489_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1000..3213
DNA (2214bp) protein (738aa)
hypothetical protein id=12494348 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98082.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_489_3
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3247..4023)
DNA (777bp) protein (259aa)
id=12494457 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
General secretory pathway protein N {ECO:0000313|EMBL:GAO34652.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
SCNpilot_expt_1000_bf_scaffold_489_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4020..4511)
DNA (492bp) protein (164aa)
hypothetical protein id=12498053 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN35151.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_489_5
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4508..5752)
DNA (1245bp) protein (415aa)
hypothetical protein id=12498052 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN35150.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_489_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5772..6686)
DNA (915bp) protein (305aa)
general secretion pathway protein K id=12498051 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Type II secretion system protein K {ECO:0000256|PIRNR:PIRNR002786}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
general secretion pathway protein K rbh
SCNpilot_expt_1000_bf_scaffold_489_7
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6683..7276)
DNA (594bp) protein (198aa)
general secretion pathway protein J id=12498050 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
General secretion pathway protein J {ECO:0000313|EMBL:GAO34648.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
general secretion pathway protein J
SCNpilot_expt_1000_bf_scaffold_489_8
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7279..7653)
DNA (375bp) protein (125aa)
general secretion pathway protein I id=12498049 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
general secretion pathway protein I
General secretion pathway protein I {ECO:0000313|EMBL:BAN35147.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_489_9
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7650..8138)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI000368CD69
type II secretion system protein G; K02457 general secretion pathway protein H
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
SCNpilot_expt_1000_bf_scaffold_489_10
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8159..8599)
DNA (441bp) protein (147aa)
gspG; general secretory pathway protein G, type II secretion system; K02456 general secretion pathway protein G id=12498047 bin=THIO_MID species=unknown genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
general secretion pathway protein G; K02456 general secretion pathway protein G
General secretion pathway protein G {ECO:0000313|EMBL:ACS64313.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12D).;"
SCNpilot_expt_1000_bf_scaffold_489_11
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8663..9880)
DNA (1218bp) protein (406aa)
general secretion pathway protein F id=12498046 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
general secretion pathway protein F rbh
General secretion pathway protein F {ECO:0000313|EMBL:BAN35143.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_489_12
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9884..11389)
DNA (1506bp) protein (502aa)
general secretory pathway protein E id=12498045 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
general secretory pathway protein E rbh
General secretory pathway protein E {ECO:0000313|EMBL:BAN35142.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_489_13
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11394..13430)
DNA (2037bp) protein (679aa)
type II and III secretion system protein id=12498044 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
type II and III secretion system protein rbh
Tax=CG_Beta_01
SCNpilot_expt_1000_bf_scaffold_489_14
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13427..14230)
DNA (804bp) protein (268aa)
hypothetical protein id=12498043 bin=THIO_MID species=Novosphingobium aromaticivorans genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
xcsC; type II secretion system protein C; K02452 general secretion pathway protein C
Tax=CG_Beta_01
SCNpilot_expt_1000_bf_scaffold_489_15
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14334..15737)
DNA (1404bp) protein (468aa)
Fis family transcriptional regulator id=12498042 bin=THIO_MID species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Fis family transcriptional regulator rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_16
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15734..17107)
DNA (1374bp) protein (458aa)
PAS/PAC sensor signal transduction histidine kinase id=12498041 bin=THIO_MID species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
PAS/PAC sensor signal transduction histidine kinase rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_17
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17287..18480)
DNA (1194bp) protein (398aa)
phosphate-selective porin O and P id=12498040 bin=THIO_MID species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
phosphate-selective porin O and P
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_18
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18482..18985)
DNA (504bp) protein (168aa)
hypothetical protein id=12498039 bin=THIO_MID species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_19
unknown

Not on your lists

comp(18982..19239)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_489_20
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19383..20594)
DNA (1212bp) protein (404aa)
hypothetical protein id=12498038 bin=THIO_MID species=Singularimonas variicoloris genus=Singularimonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_21
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20667..22166)
DNA (1500bp) protein (500aa)
rhodanese-related sulfurtransferase id=12498037 bin=THIO_MID species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rhodanese-related sulfurtransferase
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_22
unknown

Not on your lists

comp(22318..22503)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_489_23
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22500..22760)
DNA (261bp) protein (87aa)
hypothetical protein id=12498035 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_24
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22770..23081)
DNA (312bp) protein (104aa)
hypothetical protein id=12498034 bin=THIO_MID species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_25
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23085..23336)
DNA (252bp) protein (84aa)
SirA family protein id=12498033 bin=THIO_MID species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SirA family protein
SirA family protein {ECO:0000313|EMBL:ACL71168.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_1000_bf_scaffold_489_26
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23387..23875)
DNA (489bp) protein (163aa)
hypothetical protein; K07112 id=12498032 bin=THIO_MID species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein; K07112
Uncharacterized protein {ECO:0000313|EMBL:ACL71167.1}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_1000_bf_scaffold_489_27
unknown

Not on your lists

24232..24657
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_489_28
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24878..25207)
DNA (330bp) protein (110aa)
SirA family protein id=12498031 bin=THIO_MID species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SirA family protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_489_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25865..27319)
DNA (1455bp) protein (485aa)
anthranilate synthase, component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27]
Anthranilate synthase component I id=1350887 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_489_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27437..28117)
DNA (681bp) protein (227aa)
cbbZ; phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase id=1350886 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 80 in total

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