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SCNpilot_expt_1000_bf_scaffold_513

Search features with annotation key words

Displaying items 1-30 of 112 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_513_1
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(378..1589)
DNA (1212bp) protein (404aa)
Uncharacterized protein id=4874732 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA rbh
hypothetical protein rbh
Tax=RBG_16_Gamma2_64_10_curated
SCNpilot_expt_1000_bf_scaffold_513_2
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1875..2318)
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Marinobacter manganoxydans MnI7-9 RepID=G6YSJ7_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:KJS09093.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_513_3
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2296..2967)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C183_NITHN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_expt_1000_bf_scaffold_513_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3014..4237)
DNA (1224bp) protein (408aa)
N6-adenine-specific DNA methylase; K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
DNA methylase n=1 Tax=Thiobacillus denitrificans RepID=UPI000378F112
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4356..4739)
DNA (384bp) protein (128aa)
transmembrane protein; K08973 putative membrane protein id=12496477 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transmembrane protein; K08973 putative membrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_513_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4768..5295
DNA (528bp) protein (176aa)
alkyl hydroperoxide reductase id=12494162 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
alkyl hydroperoxide reductase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_513_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5295..5495
DNA (201bp) protein (67aa)
SlyX protein; K03745 SlyX protein id=12496475 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
SlyX protein; K03745 SlyX protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5506..6129)
DNA (624bp) protein (208aa)
3-methyladenine DNA glycosylase II (EC:3.2.2.21); K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21] id=12496464 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
3-methyladenine DNA glycosylase II (EC:3.2.2.21); K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
3-methyladenine DNA glycosylase II {ECO:0000313|EMBL:AAZ98389.1}; EC=3.2.2.21 {ECO:0000313|EMBL:AAZ98389.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_513_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6309..7763)
DNA (1455bp) protein (485aa)
RNAse G (EC:3.1.4.-); K08301 ribonuclease G [EC:3.1.26.-]
Ribonuclease E and G n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SG66_THIDA
Ribonuclease E and G {ECO:0000313|EMBL:AAZ98390.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_513_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7848..8459)
DNA (612bp) protein (204aa)
septum formation inhibitor Maf n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C9B3C
maf; Maf-like protein; K06287 septum formation protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_513_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8475..8945)
DNA (471bp) protein (157aa)
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] id=12493214 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9113..9472)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003611A43
Iojap-like protein; K09710 ribosome-associated protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_513_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10162..10782)
DNA (621bp) protein (207aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
gamma-glutamyl phosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036924DC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_513_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10733..11431)
DNA (699bp) protein (233aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
Gamma-glutamyl phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000255|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000255|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GSA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thioba
gamma-glutamyl phosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036924DC
SCNpilot_expt_1000_bf_scaffold_513_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11428..12468)
DNA (1041bp) protein (347aa)
DNA polymerase III subunit delta (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit id=1320908 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12465..12953)
DNA (489bp) protein (163aa)
Putative lipoprotein B transmembrane id=1320909 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative lipoprotein B transmembrane; K03643 LPS-assembly lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12950..15646)
DNA (2697bp) protein (899aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
leucyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI000375C025 rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15893..16780
DNA (888bp) protein (296aa)
cbbP; phosphoribulokinase (EC:2.7.1.19); K00855 phosphoribulokinase [EC:2.7.1.19]
Phosphoribulokinase {ECO:0000313|EMBL:AAZ98400.1}; EC=2.7.1.19 {ECO:0000313|EMBL:AAZ98400.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Phosphoribulokinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SG56_THIDA
SCNpilot_expt_1000_bf_scaffold_513_19
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16844..19486)
DNA (2643bp) protein (881aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003755EC1 rbh
amtE; ammonia permease; K03320 ammonium transporter, Amt family
Tax=RBG_16_Gammaproteobacteria_57_12_curated
SCNpilot_expt_1000_bf_scaffold_513_20
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19483..19908)
DNA (426bp) protein (142aa)
chemotaxis protein CheY n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B42E7C
response regulator receiver domain-containing protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
SCNpilot_expt_1000_bf_scaffold_513_21
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19905..21671)
DNA (1767bp) protein (589aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037F877E rbh
multi-sensor signal transduction histidine kinase
Tax=RBG_16_Gallionellales_56_9_curated
SCNpilot_expt_1000_bf_scaffold_513_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21736..21987)
DNA (252bp) protein (84aa)
Putative uncharacterized protein id=1320914 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K03636 molybdopterin synthase sulfur carrier subunit
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22034..24145
DNA (2112bp) protein (704aa)
ATP-dependent DNA helicase UvrD (EC:3.6.1.-); K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
ATP-dependent DNA helicase id=1320915 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24121..24891)
DNA (771bp) protein (257aa)
Possible transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SG53_THIDA
transmembrane protein
Possible transmembrane protein {ECO:0000313|EMBL:AAZ98403.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_513_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24891..25217)
DNA (327bp) protein (109aa)
hypothetical protein id=12496446 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98404.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_513_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25238..25966)
DNA (729bp) protein (243aa)
decarboxylase n=1 Tax=Thiobacillus denitrificans RepID=UPI000378FDA9
hypothetical protein; K06966
Uncharacterized protein {ECO:0000313|EMBL:AAZ98405.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_513_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25980..28682
DNA (2703bp) protein (901aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] rbh
DNA polymerase I n=1 Tax=Thiobacillus denitrificans RepID=UPI0003736D9B rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_513_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28771..30042)
DNA (1272bp) protein (424aa)
hypothetical protein id=12496443 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AAZ98407.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_513_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30197..30619)
DNA (423bp) protein (141aa)
large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel id=12495606 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_513_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30749..31789
DNA (1041bp) protein (347aa)
dihydrouridine synthase; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-] id=12496441 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
dihydrouridine synthase; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-]
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 112 in total

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