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SCNpilot_expt_1000_bf_scaffold_597

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_597_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..181)
DNA (180bp) protein (60aa)
chaperonin GroEL (Hsp60, Cpn10); K04077 chaperonin GroEL
chaperonin GroEL (Hsp60, Cpn10); K04077 chaperonin GroEL id=12495965 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
60 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00600}; GroEL protein {ECO:0000255|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000255|HAMAP-Rule:MF_00600}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_597_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(229..519)
DNA (291bp) protein (97aa)
molecular chaperone GroES n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DE7F7
groES; co-chaperonin GroES; K04078 chaperonin GroES
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_597_3
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

893..2227
DNA (1335bp) protein (445aa)
ferric reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AD2D6 rbh
ferric reductase rbh
Predicted ferric reductase {ECO:0000313|EMBL:BAE52139.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_expt_1000_bf_scaffold_597_4
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2604..3434
DNA (831bp) protein (277aa)
Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I6Z4N2_PSEST rbh
catalytic LigB subunit of aromatic ring-opening dioxygenase rbh
Uncharacterized protein {ECO:0000313|EMBL:AFN77987.1}; TaxID=1123519 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri DSM 10701.;"
SCNpilot_expt_1000_bf_scaffold_597_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3997..5373
DNA (1377bp) protein (459aa)
aminotransferase (EC:2.6.1.-); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] rbh
Adenosylmethionine--8-amino-7-oxononanoate aminotransferase id=1367066 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5441..6073
DNA (633bp) protein (211aa)
Transcriptional regulator, TetR family id=1367065 bin=GWE1_T_denit_62_9 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
transcriptional regulator, TetR family
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_7
unknown

Not on your lists

6070..6165
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_597_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6252..7682
DNA (1431bp) protein (477aa)
metallo-beta-lactamase superfamily protein; K07576 metallo-beta-lactamase family protein id=12494946 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
metallo-beta-lactamase superfamily protein; K07576 metallo-beta-lactamase family protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_597_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7695..8711
DNA (1017bp) protein (339aa)
phospholipase (EC:3.1.1.32); K01058 phospholipase A1 [EC:3.1.1.32]
Phospholipase {ECO:0000313|EMBL:AAZ96049.1}; EC=3.1.1.32 {ECO:0000313|EMBL:AAZ96049.1};; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003605713
SCNpilot_expt_1000_bf_scaffold_597_10
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

8805..9983
DNA (1179bp) protein (393aa)
Putative uncharacterized protein n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RCS7_AMMDK
hypothetical protein
Tax=RBG_16_KB1_OP1_55_9_curated
SCNpilot_expt_1000_bf_scaffold_597_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9989..11719
DNA (1731bp) protein (577aa)
Putative ABC transporter, permease protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AFV0_AZOBR
putative ABC transporter, permease protein
Putative ABC transporter, permease protein {ECO:0000313|EMBL:CCC99105.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_597_12
Burkholderia oklahomensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11729..13021
DNA (1293bp) protein (431aa)
nitrate ABC transporter ATP-binding protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A5642 rbh
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein rbh
ABC transporter family protein {ECO:0000313|EMBL:AIO65246.1}; TaxID=342113 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia oklahomensis.;"
SCNpilot_expt_1000_bf_scaffold_597_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13011..13877)
DNA (867bp) protein (289aa)
serine protease; K01362 [EC:3.4.21.-]
Serine protease, trypsin family id=1321830 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13893..14573
DNA (681bp) protein (227aa)
UDP-glucose/GDP-mannose dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-] id=12494949 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
UDP-glucose/GDP-mannose dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14567..15148
DNA (582bp) protein (194aa)
UDP-glucose/GDP-mannose dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-] id=12495959 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
UDP-glucose/GDP-mannose dehydrogenase; K02474 UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.-]
UDP-glucose/GDP-mannose dehydrogenase {ECO:0000313|EMBL:AAZ96051.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_597_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15148..16179
DNA (1032bp) protein (344aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] id=12495958 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16236..17816
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003678F3B
signal transduction protein
Predicted signal transduction protein {ECO:0000313|EMBL:AAZ96053.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_597_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18145..19560
DNA (1416bp) protein (472aa)
D-alanyl-D-alanine carboxypeptidase PBP3 (EC:3.4.16.4); K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Peptidase S13, D-Ala-D-Ala carboxypeptidase C id=1321834 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19560..19781
DNA (222bp) protein (74aa)
hypothetical protein id=1321835 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19785..20516)
DNA (732bp) protein (244aa)
hypothetical protein; K09914 putative lipoprotein id=12495955 bin=THIO_MID species=Kaistia granuli genus=Kaistia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
heat shock protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_597_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20513..21742)
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003767F14 rbh
diguanylate phosphodiesterase rbh
Diguanylate phosphodiesterase {ECO:0000313|EMBL:BAN34693.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_597_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21746..23209)
DNA (1464bp) protein (488aa)
3-octaprenyl-4hydroxybenzoate decarboxylase (EC:4.1.1.-); K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]
3-octaprenyl-4-hydroxybenzoate carboxy-lyase id=1321839 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_597_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23214..23786)
DNA (573bp) protein (191aa)
hypothetical protein id=12494956 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_24
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23783..24376)
DNA (594bp) protein (198aa)
phosphoheptose isomerase (EC:5.3.1.-); K03271 D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
DnaA initiator-associating protein DiaA n=1 Tax=Thiobacillus thioparus RepID=UPI000370B1B5
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_597_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24408..24758)
DNA (351bp) protein (117aa)
hypothetical protein; K07460 putative endonuclease id=12494122 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K07460 putative endonuclease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_597_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24777..25646
DNA (870bp) protein (290aa)
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376DE2F
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_597_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25643..26677
DNA (1035bp) protein (345aa)
dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] rbh
Dihydroorotase {ECO:0000256|RuleBase:RU003440, ECO:0000256|SAAS:SAAS00189352}; EC=3.5.2.3 {ECO:0000256|RuleBase:RU003440, ECO:0000256|SAAS:SAAS00189348};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Dihydroorotase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SMI3_THIDA rbh
SCNpilot_expt_1000_bf_scaffold_597_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27251..27697
DNA (447bp) protein (149aa)
Protein MraZ id=1321846 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K03925 MraZ protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27694..28635
DNA (942bp) protein (314aa)
methyltransferase; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
16S rRNA methyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003679904
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_597_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28638..28910
DNA (273bp) protein (91aa)
cell division protein FtsL n=1 Tax=Thiobacillus thioparus RepID=UPI00036D4ABF
cell division protein FtsL; K03586 cell division protein FtsL
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 85 in total

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