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SCNpilot_expt_1000_bf_scaffold_1198

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1198_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1519
DNA (1518bp) protein (506aa)
excinuclease ABC subunit B n=1 Tax=Thiobacillus thioparus RepID=UPI0003794EB7
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1198_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1512..1997
DNA (486bp) protein (162aa)
protein tyrosine phosphatase (EC:3.1.3.48); K01104 protein-tyrosine phosphatase [EC:3.1.3.48]
Protein tyrosine phosphatase {ECO:0000313|EMBL:AAZ97518.1}; EC=3.1.3.48 {ECO:0000313|EMBL:AAZ97518.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
phosphotyrosine protein phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A6771
SCNpilot_expt_1000_bf_scaffold_1198_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2281..3909)
DNA (1629bp) protein (543aa)
RNAse E (EC:3.1.4.-); K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ribonuclease E n=1 Tax=Thiobacillus thioparus RepID=UPI00036E0F99
SCNpilot_expt_1000_bf_scaffold_1198_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3882..4865)
DNA (984bp) protein (328aa)
RNAse E (EC:3.1.4.-); K08300 ribonuclease E [EC:3.1.26.12]
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Ribonuclease E n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIL1_THIDA
SCNpilot_expt_1000_bf_scaffold_1198_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5266..6228
DNA (963bp) protein (321aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ribosomal large subunit pseudouridine synthase C n=1 Tax=Thiobacillus thioparus RepID=UPI000368ADF0 rbh
SCNpilot_expt_1000_bf_scaffold_1198_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6212..6868
DNA (657bp) protein (219aa)
putative hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
HAD family hydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00036BD3A9
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1198_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6847..7200
DNA (354bp) protein (118aa)
hypothetical protein id=12497572 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1198_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7197..8150
DNA (954bp) protein (318aa)
protease; K04773 protease IV [EC:3.4.21.-] rbh
Protease id=1342850 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1198_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8147..8359
DNA (213bp) protein (71aa)
transcriptional antiterminator, Rof id=12493108 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
transcriptional antiterminator, Rof
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1198_10
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8430..9644
DNA (1215bp) protein (405aa)
Drug resistance transporter Bcr/CflA subfamily protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXF3_9PROT rbh
Bcr/CflA subfamily drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_1198_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9737..10003)
DNA (267bp) protein (89aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00036AD0C6
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1198_12
unknown

Not on your lists

comp(10548..10676)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1198_13
unknown

Not on your lists

comp(10831..11211)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1198_14
unknown

Not on your lists

comp(11327..11917)
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1198_15
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11921..12871)
DNA (951bp) protein (317aa)
Putative phage capsid family n=1 Tax=Burkholderia pseudomallei 406e RepID=A8EHT2_BURPE
Putative phage capsid family {ECO:0000313|EMBL:EDO85997.1}; TaxID=360118 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei 406e.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1198_16
unknown

Not on your lists

12907..13263
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1198_17
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13336..13839)
DNA (504bp) protein (168aa)
DNA packaging Nu1 n=2 Tax=Alcaligenes RepID=M5J1Q5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EYS89475.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
DNA packaging Nu1
SCNpilot_expt_1000_bf_scaffold_1198_18
unknown

Not on your lists

13930..14139
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1198_19
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14253..15857)
DNA (1605bp) protein (535aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6Y8U2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO78847.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1198_20
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15854..16777)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPP4_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44983.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1198_21
unknown

Not on your lists

comp(16774..17127)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1198_22
unknown

Not on your lists

comp(17124..17354)
DNA (231bp) protein (77aa)
id=12497560 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_1198_23
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17564..18520)
DNA (957bp) protein (319aa)
hypothetical protein id=12497561 bin=THIO_MID species=Methylibium petroleiphilum genus=Methylibium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM93510.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_1000_bf_scaffold_1198_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18696..20003)
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036656BF
cyclic nucleotide-binding domain-containing protein; K07058 membrane protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1198_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20210..20680
DNA (471bp) protein (157aa)
tRNA-adenosine deaminase (EC:3.5.4.-); K01485 cytosine deaminase [EC:3.5.4.1]
CRISPR-associated protein Csn1 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E76EF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1198_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20677..21174
DNA (498bp) protein (166aa)
Putative uncharacterized protein id=1329023 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1198_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21193..21663)
DNA (471bp) protein (157aa)
Putative flagella synthesis protein FlgN n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SID5_THIDA
putative flagella synthesis protein FlgN; K02399 flagella synthesis protein FlgN
Putative flagella synthesis protein FlgN {ECO:0000313|EMBL:AAZ97593.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1198_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21650..21946)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361F3AE
putative anti-sigma-28 factor, FlgM; K02398 negative regulator of flagellin synthesis FlgM
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1198_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22033..22731)
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036511CB
flgA; flagellar basal body P-ring biosynthesis protein FlgA; K02386 flagella basal body P-ring formation protein FlgA
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1198_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22897..23304
DNA (408bp) protein (136aa)
Flagellar basal body rod protein FlgB id=1359590 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
flagellar basal-body rod protein FlgB; K02387 flagellar basal-body rod protein FlgB
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 45 in total

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