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SCNpilot_expt_1000_bf_scaffold_1461

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1461_1
unknown

Not on your lists

comp(407..616)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1461_2
unknown

Not on your lists

2397..2636
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1461_3
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5051..5341)
DNA (291bp) protein (97aa)
CRISPR-associated protein Cas2 n=1 Tax=Thiobacillus thioparus RepID=UPI0003671058
CRISPR-associated protein Cas2
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_expt_1000_bf_scaffold_1461_4

Not on your lists

comp(5346..6380)
DNA (1035bp) protein (345aa)
CRISPR-associated protein Cas1 n=1 Tax=Thiobacillus thioparus RepID=UPI0003809A16
CRISPR-associated protein Cas1 {ECO:0000313|EMBL:CBH96439.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1
SCNpilot_expt_1000_bf_scaffold_1461_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6425..6730
DNA (306bp) protein (102aa)
Prevent-host-death family protein n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CNS9_SYNLT
prevent-host-death family protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1461_6

Not on your lists

6714..7115
DNA (402bp) protein (134aa)
Nucleic acid-binding protein n=1 Tax=mine drainage metagenome RepID=T1B9M3_9ZZZZ
Nucleic acid-binding protein {ECO:0000313|EMBL:EQD50955.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
toxin-antitoxin system toxin component, PIN family
SCNpilot_expt_1000_bf_scaffold_1461_7

Not on your lists

comp(7105..7770)
DNA (666bp) protein (222aa)
CRISPR-associated Cas4 family protein n=1 Tax=mine drainage metagenome RepID=T1AWD4_9ZZZZ rbh
CRISPR-associated Cas4 family protein {ECO:0000313|EMBL:EQD61772.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
CRISPR-associated protein Cas4; K07464 putative RecB family exonuclease
SCNpilot_expt_1000_bf_scaffold_1461_8
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7802..8038
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037A8118
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_1461_9
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8341..10584)
DNA (2244bp) protein (748aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GYJ6_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDB26321.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
CRISPR-associated HD domain-containing protein; K07012 rbh
SCNpilot_expt_1000_bf_scaffold_1461_10
Synergistes sp. 3_1_syn1, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(10590..11534)
DNA (945bp) protein (315aa)
Ct1132 family CRISPR-associated protein n=1 Tax=Synergistes sp. 3_1_syn1 RepID=G9PY86_9BACT rbh
Ct1132 family CRISPR-associated protein {ECO:0000313|EMBL:EHL64637.1}; TaxID=457415 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Synergistes.;" source="Synergistes sp. 3_1_syn1.;"
CRISPR-associated protein TM1801
SCNpilot_expt_1000_bf_scaffold_1461_11

Not on your lists

comp(11531..13624)
DNA (2094bp) protein (698aa)
Uncharacterized protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1CF01_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EQD81152.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1461_12
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13614..14276)
DNA (663bp) protein (221aa)
CRISPR-associated protein Cas5 n=1 Tax=Desulfitobacterium sp. PCE1 RepID=UPI000363C94C
CRISPR-associated protein, Cas5d family {ECO:0000313|EMBL:KJR44585.1}; TaxID=1617025 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. I2.;"
CRISPR-associated protein Cas5
SCNpilot_expt_1000_bf_scaffold_1461_13
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14323..15330)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000370B854
Predicted transcriptional regulator {ECO:0000313|EMBL:BAO81056.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
Helix-turn-helix type 11 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1461_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15558..16505)
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003777979
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97966.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1461_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16592..17257)
DNA (666bp) protein (222aa)
phosphoserine phosphatase (EC:3.1.3.3)
phosphoserine phosphatase n=1 Tax=Thiobacillus thioparus RepID=UPI00037FEDE3
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1461_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17374..18102)
DNA (729bp) protein (243aa)
hypothetical protein; K07039 uncharacterized protein id=12496802 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein; K07039 uncharacterized protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1461_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18151..18834
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B745B
integral membrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1461_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19009..22752
DNA (3744bp) protein (1248aa)
ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13] rbh
ATP-dependent helicase HrpA n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHC5_THIDA rbh
ATP-dependent helicase HrpA {ECO:0000313|EMBL:AAZ97961.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1461_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22766..23329
DNA (564bp) protein (188aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036018F7
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1461_20
Thioalkalivibrio nitratireducens, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23515..27015)
DNA (3501bp) protein (1167aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DXD8_THIND rbh
Uncharacterized protein {ECO:0000313|EMBL:AGA33021.1}; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1461_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27548..27733)
DNA (186bp) protein (62aa)
hypothetical protein id=12496808 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1461_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27872..29254)
DNA (1383bp) protein (461aa)
oxidoreductase, FAD-binding; K03777 D-lactate dehydrogenase [EC:1.1.1.28]
dimethylmenaquinone methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI00037DF9FD
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1461_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29259..29678)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003636D66
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1461_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29885..30352)
DNA (468bp) protein (156aa)
Putative transmembrane protein id=1334434 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative transmembrane protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1461_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30388..30792
DNA (405bp) protein (135aa)
Putative uncharacterized protein id=1334435 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1461_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30820..31170
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHE0_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97946.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1461_27
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31170..31502
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036D6C5E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97945.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1461_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31503..31832)
DNA (330bp) protein (110aa)
hypothetical protein id=12496949 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96754.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1461_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31885..32886
DNA (1002bp) protein (334aa)
Ca2+:cation antiporter, CaCA family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKM4_THIDA
Ca2+/H+ antiporter; K07301 inner membrane protein
Ca2+:cation antiporter, CaCA family {ECO:0000313|EMBL:AAZ96755.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1461_30
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32977..33873)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003731651
hypothetical protein
Tax=CG_Rhodocyc_01
Displaying items 1-30 of 41 in total

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