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SCNpilot_expt_1000_bf_scaffold_1512

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1512_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(254..835)
DNA (582bp) protein (194aa)
Putative uncharacterized protein id=1354810 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1512_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(852..1166)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003688C66
hypothetical protein; K09913 hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1512_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1169..2398)
DNA (1230bp) protein (410aa)
argininosuccinate synthase (EC:6.3.4.5); K01940 argininosuccinate synthase [EC:6.3.4.5]
Argininosuccinate synthase {ECO:0000255|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000255|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00005}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
argininosuccinate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI000360AE62 rbh
SCNpilot_expt_1000_bf_scaffold_1512_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2409..2648)
DNA (240bp) protein (80aa)
hypothetical protein id=12497882 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2681..3598)
DNA (918bp) protein (306aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase id=1342211 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1512_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3598..4779)
DNA (1182bp) protein (394aa)
acetylornithine aminotransferase (EC:2.6.1.11); K00818 acetylornithine aminotransferase [EC:2.6.1.11]
Acetylornithine aminotransferase id=1342212 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1512_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5044..5307)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Thiobacillus denitrificans RepID=UPI000381F4BB
30S ribosomal protein S20P; K02968 small subunit ribosomal protein S20
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_8
unknown

Not on your lists

comp(5387..5545)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1512_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6230..7768
DNA (1539bp) protein (513aa)
Virulence factor MVIN-like protein id=1342217 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
virulence factor MVIN-like protein; K03980 virulence factor
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1512_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7823..8755
DNA (933bp) protein (311aa)
FMN adenylyltransferase / riboflavin kinase (EC:2.7.1.26 2.7.7.2); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin kinase id=1342218 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1512_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8748..11723
DNA (2976bp) protein (992aa)
isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] id=12494090 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria rbh
isoleucyl-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
Isoleucine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02002}; EC=6.1.1.5 {ECO:0000255|HAMAP-Rule:MF_02002};; Isoleucyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02002}; Short=IleRS {ECO:0000255|HAMAP-Rule:MF_02002};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1512_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11716..12231
DNA (516bp) protein (172aa)
signal peptidase II (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase id=1333519 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1512_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12228..12665
DNA (438bp) protein (146aa)
putative FKBP-type peptidyl-prolyl cis-trans isomerase 2; K03774 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E8C6E
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_14
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12846..13136
DNA (291bp) protein (97aa)
Transcriptional regulator, CopG family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WKL6_VEREI
CopG family transcriptional regulator
Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
SCNpilot_expt_1000_bf_scaffold_1512_15
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13124..13414
DNA (291bp) protein (97aa)
Plasmid stabilization system, toxin component n=1 Tax=Sulfitobacter guttiformis RepID=J7FY33_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CDQ11684.1}; TaxID=160808 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1512_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13431..14360
DNA (930bp) protein (310aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003776AEC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_17
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14518..14748
DNA (231bp) protein (77aa)
DNA topoisomerase id=4443886 bin=GWA2_Deltaproteo_65_63 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
SCNpilot_expt_1000_bf_scaffold_1512_18
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14745..14951
DNA (207bp) protein (69aa)
Uncharacterized protein id=4443887 bin=GWA2_Deltaproteo_65_63 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWA2_Deltaproteobacteria_65_63_curated
SCNpilot_expt_1000_bf_scaffold_1512_19
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15019..15294
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI00034B224A
Uncharacterized protein {ECO:0000313|EMBL:ESS73626.1}; TaxID=1116472 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1512_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15357..15641
DNA (285bp) protein (95aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003776AEC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15678..16112)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B6D9E
fimbrial protein pilin; K02655 type IV pilus assembly protein PilE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16137..19709)
DNA (3573bp) protein (1191aa)
Type 4 fimbrial biogenesis protein PilY1 n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTT7_9GAMM
pilY1; type 4 fimbrial biogenesis protein PilY1; K02674 type IV pilus assembly protein PilY1
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19718..20194)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000362995D
Tfp pilus assembly protein PilX; K02673 type IV pilus assembly protein PilX
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20250..21206)
DNA (957bp) protein (319aa)
Type IV pilus assembly protein PilW n=1 Tax=Thauera sp. 28 RepID=N6YG18_9RHOO
hypothetical protein; K02672 type IV pilus assembly protein PilW
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21203..21631)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000370DFFE
Tfp pilus assembly protein PilV
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21642..22208)
DNA (567bp) protein (189aa)
type-4 fimbrial pilin related signal peptide protein; K08084 type IV fimbrial biogenesis protein FimT id=12497898 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative type-4 fimbrial pilin related signal peptide protein; K08084 type IV fimbrial biogenesis protein FimT
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22373..22891)
DNA (519bp) protein (173aa)
type-4 fimbrial pilin related signal peptide protein; K08084 type IV fimbrial biogenesis protein FimT id=12497898 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
type-4 fimbrial pilin related signal peptide protein; K08084 type IV fimbrial biogenesis protein FimT
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1512_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23002..24123
DNA (1122bp) protein (374aa)
putative D-amino acid oxidase; K03153 glycine oxidase [EC:1.4.3.19] rbh
Putative D-amino acid oxidase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SEU3_THIDA rbh
Putative D-amino acid oxidase {ECO:0000313|EMBL:AAZ97819.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1512_29
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24239..24499
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377CD87
Uncharacterized protein {ECO:0000313|EMBL:CDH46940.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
Protein of unknown function DUF820
Displaying 29 items

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