ggKbase home page

SCNpilot_expt_1000_bf_scaffold_575

Search features with annotation key words

Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_575_1
Rhodococcus pyridinivorans, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..565
DNA (564bp) protein (188aa)
Putative M23 family peptidase/lytic transglycosylase n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JUA0_9NOCA
Putative M23 family peptidase/lytic transglycosylase {ECO:0000313|EMBL:EHK82295.1}; TaxID=1114960 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus pyridinivorans AK37.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_575_2
Rhodococcus qingshengii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

580..1011
DNA (432bp) protein (144aa)
Uncharacterized protein {ECO:0000313|EMBL:KDQ02275.1}; TaxID=334542 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus qingshengii.;"
SCNpilot_expt_1000_bf_scaffold_575_3
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1008..1319
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A2E7_CELGA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI11804.1}; Flags: Precursor;; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
SCNpilot_expt_1000_bf_scaffold_575_4
unknown

Not on your lists

1465..1680
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_575_5
unknown

Not on your lists

1680..1793
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_575_6
unknown

Not on your lists

1867..2049
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_575_7
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2199..3137)
DNA (939bp) protein (313aa)
integrase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5D7C9
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=867903 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
tyrosine recombinase XerD; K04763 integrase/recombinase XerD
SCNpilot_expt_1000_bf_scaffold_575_8
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3196..3579)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI000368B2E2
Uncharacterized protein {ECO:0000313|EMBL:CCI54245.1}; TaxID=1193518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_575_9
unknown

Not on your lists

comp(3606..3926)
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_575_10
unknown

Not on your lists

comp(3929..4219)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_575_11
unknown

Not on your lists

4327..4764
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_575_12
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4931..5416)
DNA (486bp) protein (162aa)
YbaK/prolyl-tRNA synthetase associated domain-containing protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI000361BDC6
YbaK/prolyl-tRNA synthetase associated domain-containing protein
YbaK/prolyl-tRNA synthetase associated region {ECO:0000313|EMBL:ADG73041.1}; TaxID=446466 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
SCNpilot_expt_1000_bf_scaffold_575_13
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5507..6820)
DNA (1314bp) protein (438aa)
Putative uncharacterized protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C0A1_BEUC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGM01823.1}; TaxID=1408250 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
SCNpilot_expt_1000_bf_scaffold_575_14
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6822..7148)
DNA (327bp) protein (109aa)
Transcriptional regulator, PadR-like family n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C0A0_BEUC1
PadR family transcriptional regulator; K10947 PadR family transcriptional regulator, regulatory protein PadR
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:ACQ79286.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_575_15
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7259..8236)
DNA (978bp) protein (326aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] rbh
Ppx/GppA phosphatase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C097_BEUC1 rbh
Ppx/GppA phosphatase {ECO:0000313|EMBL:ACQ79283.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_575_16
[Cellvibrio] gilvus, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8306..9487
DNA (1182bp) protein (394aa)
DNA-directed DNA polymerase; K02346 DNA polymerase IV [EC:2.7.7.7] rbh
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=593907 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078).;"
DNA polymerase IV n=1 Tax=Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) RepID=F8A118_CELGA rbh
SCNpilot_expt_1000_bf_scaffold_575_17
unknown

Not on your lists

comp(9468..9998)
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_575_18
Bacillus sp. EGD-AK10, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10110..10358
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Bacillus sp. EGD-AK10 RepID=U2A644_9BACI
Uncharacterized protein {ECO:0000313|EMBL:ERI40382.1}; TaxID=1386080 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. EGD-AK10.;"
SCNpilot_expt_1000_bf_scaffold_575_19
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10391..11089)
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C095_BEUC1
hypothetical protein; K09009 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACQ79281.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
SCNpilot_expt_1000_bf_scaffold_575_20
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11133..11669)
DNA (537bp) protein (179aa)
Septum formation initiator n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C094_BEUC1
septum formation initiator
Uncharacterized protein {ECO:0000313|EMBL:KEP23298.1}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
SCNpilot_expt_1000_bf_scaffold_575_21
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11986..13263)
DNA (1278bp) protein (426aa)
enolase; K01689 enolase [EC:4.2.1.11] rbh
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1497974 species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
enolase n=1 Tax=Ruania albidiflava RepID=UPI0003B61320 rbh
SCNpilot_expt_1000_bf_scaffold_575_22
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13545..14576)
DNA (1032bp) protein (344aa)
hypothetical protein n=1 Tax=Kribbella catacumbae RepID=UPI00037ED3FC rbh
LacI family transcriptional regulator rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:AEW99810.1}; Putative lacI-family transcriptional regulator {ECO:0000313|EMBL:CCB71150.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
SCNpilot_expt_1000_bf_scaffold_575_23
Streptomyces coelicolor, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14705..16069
DNA (1365bp) protein (455aa)
sugar transporter n=1 Tax=Agromyces subbeticus RepID=UPI0003B59F38 rbh
SCG22.11c; sugar transport sugar binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
Putative sugar transport sugar binding protein {ECO:0000313|EMBL:CAB95284.1}; TaxID=100226 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group.;" source="Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145).;"
SCNpilot_expt_1000_bf_scaffold_575_24
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16066..16995
DNA (930bp) protein (310aa)
ABC transporter, permease protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T2G5_LEIAQ rbh
ABC transporter, permease protein {ECO:0000313|EMBL:ERK71678.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SCG22.10c; sugar transport integral membrane protein; K02025 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_575_25
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16999..17880
DNA (882bp) protein (294aa)
ABC transporter, permease protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2TAD3_LEIAQ rbh
ABC transporter, permease protein {ECO:0000313|EMBL:ERK71677.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
SCG22.09c; sugar transport integral membrane protein; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_575_26
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17939..20074
DNA (2136bp) protein (712aa)
Hydrolase n=1 Tax=Streptomyces sp. AA4 RepID=D9VA24_9ACTO rbh
Hydrolase {ECO:0000313|EMBL:EFL05338.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
SCG22.08c; hydrolase rbh
SCNpilot_expt_1000_bf_scaffold_575_27
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20071..21921
DNA (1851bp) protein (617aa)
Glycoside hydrolase family 2 sugar binding protein n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PTT2_KRIFD
glycoside hydrolase family 2 sugar binding protein
Glycoside hydrolase family 2 sugar binding protein {ECO:0000313|EMBL:ADB33215.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
SCNpilot_expt_1000_bf_scaffold_575_28
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21918..22286
DNA (369bp) protein (123aa)
alpha-N-arabinofuranosidase; K01209 alpha-N-arabinofuranosidase [EC:3.2.1.55]
alpha-N-arabinofuranosidase n=1 Tax=Streptomyces sp. TOR3209 RepID=UPI0002E2853E
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:KFG77456.1}; TaxID=67332 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mutabilis.;"
SCNpilot_expt_1000_bf_scaffold_575_29
Xylanimonas cellulosilytica, Xylanimonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22250..23434
DNA (1185bp) protein (395aa)
alpha-N-arabinofuranosidase (EC:3.2.1.55); K01209 alpha-N-arabinofuranosidase [EC:3.2.1.55]
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:ACZ29451.1}; EC=3.2.1.55 {ECO:0000313|EMBL:ACZ29451.1};; TaxID=446471 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Xylanimonas.;" source="Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990; / XIL07).;"
alpha-N-arabinofuranosidase n=1 Tax=Cellulomonas sp. JC225 RepID=UPI0002D71DC5
SCNpilot_expt_1000_bf_scaffold_575_30
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23441..24274)
DNA (834bp) protein (278aa)
nucleoside triphosphate pyrophosphohydrolase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
MazG family protein n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5C092_BEUC1
MazG family protein {ECO:0000313|EMBL:ACQ79278.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
Displaying items 1-30 of 131 in total

View Taxonomy