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SCNpilot_expt_1000_bf_scaffold_194

Search features with annotation key words

Displaying items 1-30 of 565 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_194_1
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..861
DNA (861bp) protein (287aa)
Candidate extracytoplasmic binding receptor n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XY33_RAMTT
tctC; extracytoplasmic binding receptor
Candidate extracytoplasmic binding receptor {ECO:0000313|EMBL:AEG94358.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_194_2
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

988..2142
DNA (1155bp) protein (385aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21UW1_RHOFD
iron-containing alcohol dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_1000_bf_scaffold_194_3
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2180..3649
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000377AEE0 rbh
putative aldehyde dehydrogenase dhaS-like rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:AJP56663.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
SCNpilot_expt_1000_bf_scaffold_194_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3813..5480
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAA8_VARPE rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADU38580.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_expt_1000_bf_scaffold_194_5
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5530..6141)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4Y140_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJO28133.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_194_6
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6241..7041)
DNA (801bp) protein (267aa)
Metallo-beta-lactamase domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X5R9_9BURK
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:KCB40234.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
metallo-beta-lactamase
SCNpilot_expt_1000_bf_scaffold_194_7
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7427..8608
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase (EC:2.3.1.-); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
Acetyl-CoA C-acyltransferase {ECO:0000313|EMBL:KCB40238.1}; EC=2.3.1.16 {ECO:0000313|EMBL:KCB40238.1};; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
Acetyl-CoA acetyltransferase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SZW5_ALCXX rbh
SCNpilot_expt_1000_bf_scaffold_194_8
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8622..9470
DNA (849bp) protein (283aa)
Transcriptional regulator, IclR family n=1 Tax=Ralstonia solanacearum (strain Po82) RepID=F6FZW3_RALS8
IclR family transcriptional regulator; K02624 IclR family transcriptional regulator, pca regulon regulatory protein
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEG68475.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain Po82).;"
SCNpilot_expt_1000_bf_scaffold_194_9
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9467..10804
DNA (1338bp) protein (446aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18 4.1.1.48)
Anthranilate phosphoribosyltransferase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DIH6_9BURK
Anthranilate phosphoribosyltransferase {ECO:0000313|EMBL:EJL92646.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
SCNpilot_expt_1000_bf_scaffold_194_10
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10856..11479
DNA (624bp) protein (208aa)
Glutathione S-transferase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KYY0_BORA1
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:CAJ48053.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCNpilot_expt_1000_bf_scaffold_194_11
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11481..12410)
DNA (930bp) protein (310aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000370FB2E rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EFI59382.1}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_194_12
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12570..13094
DNA (525bp) protein (175aa)
Cupin 2 conserved barrel domain protein n=2 Tax=Burkholderia RepID=E8YPH6_9BURK rbh
cupin rbh
Cupin {ECO:0000313|EMBL:AFT84749.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
SCNpilot_expt_1000_bf_scaffold_194_13
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13128..14156
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D4A96 rbh
Tat pathway signal protein {ECO:0000313|EMBL:EYS89290.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_194_14
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14230..15156
DNA (927bp) protein (309aa)
pcaH2; protocatechuate 3,4-dioxygenase subunit beta (EC:1.13.11.-); K03381 catechol 1,2-dioxygenase [EC:1.13.11.1] rbh
Protocatechuate 3,4-dioxygenase beta subunit n=2 Tax=Burkholderiaceae RepID=Q0KDZ0_CUPNH rbh
Protocatechuate 3,4-dioxygenase subunit beta {ECO:0000313|EMBL:EON19541.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
SCNpilot_expt_1000_bf_scaffold_194_15
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15182..16171
DNA (990bp) protein (330aa)
oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI0003756F8F rbh
zinc-binding dehydrogenase family protein 5 rbh
Zinc-binding dehydrogenase family protein 5 {ECO:0000313|EMBL:ADP16431.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_1000_bf_scaffold_194_16
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16213..17199
DNA (987bp) protein (329aa)
LacI family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037098AF rbh
Tat pathway signal sequence domain-containing protein 15 rbh
Tat pathway signal sequence domain protein 15 {ECO:0000313|EMBL:ADP16432.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_expt_1000_bf_scaffold_194_17
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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17318..17851
DNA (534bp) protein (178aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Peptide deformylase (EC:3.5.1.88)
peptide deformylase n=1 Tax=Dyella japonica RepID=UPI00030BC428
SCNpilot_expt_1000_bf_scaffold_194_18
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17931..19286
DNA (1356bp) protein (452aa)
cls; cardiolipin synthetase; K06131 cardiolipin synthase [EC:2.7.8.-] rbh
Cardiolipin synthase A {ECO:0000256|HAMAP-Rule:MF_00190}; Short=CL synthase {ECO:0000256|HAMAP-Rule:MF_00190};; EC=2.7.8.- {ECO:0000256|HAMAP-Rule:MF_00190};; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
Cardiolipin synthase n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9AHS6_BURM1 rbh
SCNpilot_expt_1000_bf_scaffold_194_19
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19303..19725)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RIT4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR23185.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
SCNpilot_expt_1000_bf_scaffold_194_20
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19764..20903)
DNA (1140bp) protein (380aa)
L-lactate dehydrogenase {ECO:0000313|EMBL:AIY41329.1}; EC=1.1.2.3 {ECO:0000313|EMBL:AIY41329.1};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
lldD; L-lactate dehydrogenase (EC:1.1.2.3); K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] rbh
L-lactate dehydrogenase n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AH32_COLFT rbh
SCNpilot_expt_1000_bf_scaffold_194_21
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20951..21868)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000377AD11
transcriptional regulator, LysR family
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_1000_bf_scaffold_194_22
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21980..23050
DNA (1071bp) protein (357aa)
Taurine catabolism dioxygenase, TauD/TfdA family n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1XA92_ANEAE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_expt_1000_bf_scaffold_194_23
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23087..24049
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GY46_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ESH95086.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
putative Bug-like extra cytoplasmic solute receptor, TTT family
SCNpilot_expt_1000_bf_scaffold_194_24
unknown

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comp(24189..24314)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_194_25
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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24412..25086
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036F5CF1
ybiH; transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:KGM48641.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
SCNpilot_expt_1000_bf_scaffold_194_26
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25195..26184
DNA (990bp) protein (330aa)
Exported protein n=1 Tax=Ralstonia sp. PBA RepID=I9BVL8_9RALS
Exported protein {ECO:0000313|EMBL:EIZ03751.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
bug51; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_194_27
bacterium YEK0313, Bacteria

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26273..27712
DNA (1440bp) protein (480aa)
mtaD1; 5-methylthioadenosine/S-adenosylhomocysteine deaminase MtaD (EC:3.5.4.28 3.5.4.n1)
hypothetical protein n=1 Tax=Streptomyces canus RepID=UPI000364ACED
Isoxanthopterin deaminase {ECO:0000313|EMBL:CEJ13103.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_194_28
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27709..28797
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036DF70D rbh
amidohydrolase 2 rbh
Amidohydrolase 2 {ECO:0000313|EMBL:ABQ68046.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_194_29
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28834..29871)
DNA (1038bp) protein (346aa)
D-3-phosphoglycerate dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HBD5_9BRAD rbh
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:ERF81786.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_194_30
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30032..30871
DNA (840bp) protein (280aa)
Glc operon protein GlcG n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GW61_9BRAD rbh
Glc operon protein GlcG {ECO:0000313|EMBL:ERF81787.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
binding-protein-dependent transport systems inner membrane component
Displaying items 1-30 of 565 in total

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