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SCNpilot_expt_1000_bf_scaffold_213

Search features with annotation key words

Displaying items 1-30 of 274 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_213_1
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

248..2170
DNA (1923bp) protein (641aa)
Probable conjugal transfer protein VirD2 n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IEW8_BORPD
virD2; conjugal transfer protein VirD2
Probable conjugal transfer protein VirD2 {ECO:0000313|EMBL:CAP44919.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_2
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2863..4068)
DNA (1206bp) protein (402aa)
Arabinose efflux permease family protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KBT2_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJE51015.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
arsP; major facilitator superfamily permease rbh
SCNpilot_expt_1000_bf_scaffold_213_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4070..4795)
DNA (726bp) protein (242aa)
NADPH-dependent FMN reductase n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036C7DEB rbh
arsenical resistance protein ArsH; K11811 arsenical resistance protein ArsH rbh
Arsenical resistance protein ArsH {ECO:0000313|EMBL:ACS18606.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_213_4
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4788..5210)
DNA (423bp) protein (141aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
arsC1; arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9T341_9RALS
SCNpilot_expt_1000_bf_scaffold_213_5
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5244..6311)
DNA (1068bp) protein (356aa)
Arsenical-resistance protein n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7K2B8_PSEPS
sodium bile acid symporter family protein; K03325 arsenite transporter, ACR3 family
Arsenical-resistance protein {ECO:0000313|EMBL:CDM40566.1}; TaxID=1182590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes CECT 5344.;"
SCNpilot_expt_1000_bf_scaffold_213_6
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6320..6811)
DNA (492bp) protein (164aa)
Arsenate reductase, putative {ECO:0000313|EMBL:CDM40565.1}; EC=1.20.4.1 {ECO:0000313|EMBL:CDM40565.1};; TaxID=1182590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes CECT 5344.;"
Arsenate reductase, putative n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7IE08_PSEPS
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_213_7
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6820..7299)
DNA (480bp) protein (160aa)
glyoxalase (EC:4.4.1.5)
Glyoxalase family protein {ECO:0000313|EMBL:CAP41357.1}; EC=4.4.1.5 {ECO:0000313|EMBL:CAP41357.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Glyoxalase n=1 Tax=Pseudomonas aeruginosa HB15 RepID=V4MIP5_PSEAI
SCNpilot_expt_1000_bf_scaffold_213_8
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7310..7636)
DNA (327bp) protein (109aa)
Putative transcriptional regulator, ArsR family n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GNL2_THISH
ArsR family transcriptional regulator
Putative transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACL73903.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_expt_1000_bf_scaffold_213_9
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7764..8624)
DNA (861bp) protein (287aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702, ECO:0000313|EMBL:CKI20386.1}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702, ECO:0000313|EMBL:CKI20386.1};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
pstB; phosphate transporter ATP-binding protein (EC:3.6.3.27); K02036 phosphate transport system ATP-binding protein [EC:3.6.3.27]
Phosphate transporter ATP-binding protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4PIW5_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_213_10
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8621..9478)
DNA (858bp) protein (286aa)
Transmembrane component of ABC transporter n=1 Tax=Achromobacter piechaudii HLE RepID=J4Z6M6_9BURK rbh
Transmembrane component of ABC transporter {ECO:0000313|EMBL:EJO33751.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
phosphate ABC transporter inner membrane subunit PstA; K02038 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_213_11
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9525..10511)
DNA (987bp) protein (329aa)
Phosphate ABC transporter permease n=1 Tax=Achromobacter piechaudii HLE RepID=J4QZ95_9BURK rbh
Phosphate transport system permease protein pstC {ECO:0000313|EMBL:CKI20410.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
phosphate ABC transporter inner membrane subunit PstC; K02037 phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_213_12
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10625..11641)
DNA (1017bp) protein (339aa)
Phosphate-binding protein PstS n=1 Tax=Achromobacter piechaudii HLE RepID=J4J987_9BURK rbh
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
pstS; ABC transporter phosphate binding protein; K02040 phosphate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_213_13
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12350..13231
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035DD133
D-alanyl-D-alanine endopeptidase {ECO:0000313|EMBL:KGG85579.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_213_14
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13593..15650
DNA (2058bp) protein (686aa)
Conjugal transfer protein TraG n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF53_BORPD
traG2; conjugal transfer coupling protein TraG
Conjugal transfer protein TraG {ECO:0000313|EMBL:CAP44966.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_15
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15647..16159
DNA (513bp) protein (171aa)
Putative DNA-binding protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF54_BORPD
DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:CAP44967.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_16
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16143..17123
DNA (981bp) protein (327aa)
Conjugal transfer protein TrbB n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF56_BORPD rbh
trbB2; conjugal transfer protein TrbB rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:CAP44968.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_17
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17120..17503
DNA (384bp) protein (128aa)
Conjugal transfer protein TrbC n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF57_BORPD
trbC2; conjugal transfer protein TrbC
Conjugal transfer protein TrbC {ECO:0000313|EMBL:CAP44969.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_18
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17500..17778
DNA (279bp) protein (93aa)
Conjugal transfer protein TrbD n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF58_BORPD
trbD2; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
Conjugal transfer protein TrbD {ECO:0000313|EMBL:CAP44970.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_19
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17794..19035
DNA (1242bp) protein (414aa)
Conjugal transfer protein TrbE n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF60_BORPD
trbE2; conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
Conjugal transfer protein TrbE {ECO:0000313|EMBL:CAP44971.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_20
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19035..20345
DNA (1311bp) protein (437aa)
Conjugal transfer protein TrbE n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF60_BORPD
trbE2; conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
Conjugal transfer protein TrbE {ECO:0000313|EMBL:CAP44971.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_21
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20342..21076
DNA (735bp) protein (245aa)
Conjugal transfer protein TrbJ n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF61_BORPD
trbJ2; conjugal transfer protein TrbJ
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:CAP44972.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_22
unknown

Not on your lists

21115..21399
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_213_23
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21421..22689
DNA (1269bp) protein (423aa)
Conjugal transfer protein TrbL n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF63_BORPD
trbL2; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:CAP44974.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_24
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22699..23454
DNA (756bp) protein (252aa)
Conjugal transfer protein TrbF n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF65_BORPD rbh
trbF2; conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:CAP44975.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_25
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23451..24638
DNA (1188bp) protein (396aa)
Conjugal transfer protein TrbG n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF66_BORPD
trbG2; conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:CAP44976.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_26
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24635..25888
DNA (1254bp) protein (418aa)
Conjugal transfer protein TrbI n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF67_BORPD
trbI2; conjugal transfer protein TrbI
Conjugal transfer protein TrbI {ECO:0000313|EMBL:CAP44977.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_27
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25903..26118
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IF69_BORPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP44978.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_213_28
unknown

Not on your lists

26204..26536
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_213_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27243..29537
DNA (2295bp) protein (765aa)
MscS Mechanosensitive ion channel n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y8V4_NITMU
mechanosensitive ion channel MscS
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABB74817.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_1000_bf_scaffold_213_30
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29593..29820
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HT80_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96217.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Displaying items 1-30 of 274 in total

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