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SCNpilot_expt_1000_bf_scaffold_725

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_725_1
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1079)
DNA (1077bp) protein (359aa)
Putative molybdenum-binding protein n=1 Tax=Ralstonia sp. PBA RepID=I9C0A2_9RALS rbh
Putative molybdenum-binding protein {ECO:0000313|EMBL:EIZ05326.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
putative molybdenum-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_725_2
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1207..2943
DNA (1737bp) protein (579aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5] rbh
NAD-dependent formate dehydrogenase flavoprotein subunit n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q129S2_POLSJ rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_expt_1000_bf_scaffold_725_3
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2945..5755
DNA (2811bp) protein (937aa)
zinc-containing alcohol dehydrogenase (EC:1.1.1.1); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] rbh
formate dehydrogenase subunit alpha n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003097D29 rbh
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:AGW94307.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCNpilot_expt_1000_bf_scaffold_725_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6056..7513)
DNA (1458bp) protein (486aa)
Succinate-semialdehyde dehdyrogenase {ECO:0000313|EMBL:AIJ45734.1}; EC=1.2.1.16 {ECO:0000313|EMBL:AIJ45734.1};; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
Aldehyde dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B13_RHOPB
aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_725_5
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7510..8697)
DNA (1188bp) protein (396aa)
L-lactate dehydrogenase (EC:1.1.2.3)
L-lactate dehydrogenase {ECO:0000313|EMBL:CCH08551.1}; EC=1.1.2.3 {ECO:0000313|EMBL:CCH08551.1};; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
L-lactate dehydrogenase n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XVA9_ALCXX
SCNpilot_expt_1000_bf_scaffold_725_6
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8707..9681)
DNA (975bp) protein (325aa)
Extra-cytoplasmic solute receptor family protein 62 n=2 Tax=Bordetella holmesii RepID=M5NL37_9BORD
Uncharacterized protein {ECO:0000313|EMBL:AIJ49692.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
tctC7; tricarboxylate binding receptor
SCNpilot_expt_1000_bf_scaffold_725_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9737..10867)
DNA (1131bp) protein (377aa)
mandelate racemase n=1 Tax=Variovorax paradoxus RepID=UPI00037743DB
Variovorax paradoxus strain MEDvA23 contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33934.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
mandelate racemase/muconate lactonizing protein
SCNpilot_expt_1000_bf_scaffold_725_8
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10885..11856)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00036D5153 rbh
extra-cytoplasmic solute receptor
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_1000_bf_scaffold_725_9
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11927..13615)
DNA (1689bp) protein (563aa)
acetolactate synthase catalytic subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00036D2A24 rbh
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_expt_1000_bf_scaffold_725_10
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13691..14650
DNA (960bp) protein (320aa)
Miscellaneous not classified regulator n=4 Tax=Ralstonia solanacearum RepID=M4V2C8_RALSL
miscellaneous; not classified regulator
Probable transcriptional regulator transcription regulator protein {ECO:0000313|EMBL:CAD18038.1}; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
SCNpilot_expt_1000_bf_scaffold_725_11
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14695..15930
DNA (1236bp) protein (412aa)
Transporter n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YL15_9RHIZ
Transporter {ECO:0000313|EMBL:EHH03260.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_725_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15941..16288)
DNA (348bp) protein (116aa)
Probable transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJI6_THIDA
transmembrane protein
Probable transmembrane protein {ECO:0000313|EMBL:AAZ97171.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_725_13
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16363..17016)
DNA (654bp) protein (218aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QRP3_BORBO
hypothetical protein
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_expt_1000_bf_scaffold_725_14
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17135..18100)
DNA (966bp) protein (322aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
Sulfoxide reductase catalytic subunit YedY n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QKS2_BORBO rbh
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_725_15
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18279..19607)
DNA (1329bp) protein (443aa)
Putative cytochrome c asssembly protein n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W2C1_BORPA rbh
Cytochrome c-type biogenesis protein CcsB {ECO:0000313|EMBL:KCV63837.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
cytochrome c asssembly protein rbh
SCNpilot_expt_1000_bf_scaffold_725_16
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19612..21741)
DNA (2130bp) protein (710aa)
Cytochrome c-type biogenesis protein Ccs1/ResB n=3 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XSS8_ALCXX rbh
Cytochrome c-type biogenesis protein Ccs1/ResB rbh
Cytochrome C biogenesis protein ResB {ECO:0000313|EMBL:AIR54362.1}; Cytochrome C-type biogenesis transmembrane protein {ECO:0000313|EMBL:EFV82151.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
SCNpilot_expt_1000_bf_scaffold_725_17
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21866..22546)
DNA (681bp) protein (227aa)
cytochrome C n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI0003822C2F
oxidoreductase cytochrome C4 class
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG21236.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
SCNpilot_expt_1000_bf_scaffold_725_18
blood disease bacterium R229, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22882..23406
DNA (525bp) protein (175aa)
Uncharacterized protein n=2 Tax=Ralstonia RepID=D8NVC1_RALSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA79267.1}; TaxID=741978 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="blood disease bacterium R229.;"
SCNpilot_expt_1000_bf_scaffold_725_19
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23479..24102
DNA (624bp) protein (208aa)
GTP-binding protein EngB n=1 Tax=Advenella kashmirensis W13003 RepID=V8QYT1_9BURK rbh
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
GTP-binding protein; K03978 GTP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_725_20
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24184..25194
DNA (1011bp) protein (337aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
hemB; delta-aminolevulinic acid dehydratase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24] rbh
Delta-aminolevulinic acid dehydratase n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SZ55_ALCXX rbh
SCNpilot_expt_1000_bf_scaffold_725_21
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25199..26404
DNA (1206bp) protein (402aa)
Mg2+ transporter protein, CorA-like protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AGD9_COLFT rbh
Mg2+ transporter protein, CorA-like protein rbh
Mg2+ transporter protein, CorA-like protein {ECO:0000313|EMBL:AEK60269.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_expt_1000_bf_scaffold_725_22
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26408..27523
DNA (1116bp) protein (372aa)
UPI00039AC74E related cluster n=1 Tax=unknown RepID=UPI00039AC74E
DNA-binding HTH domain-containing proteins {ECO:0000313|EMBL:GAD21329.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_725_23
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27537..29462)
DNA (1926bp) protein (642aa)
dsbD; hypothetical protein; K04084 thiol:disulfide interchange protein DsbD [EC:1.8.1.8] rbh
Thiol:disulfide interchange protein DsbD {ECO:0000256|HAMAP-Rule:MF_00399}; EC=1.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00399, ECO:0000313|EMBL:CAP45272.1};; Protein-disulfide reductase {ECO:0000256|HAMAP-Rule:MF_00399}; Flags: Precursor;; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Thiol:disulfide interchange protein DsbD n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IHQ9_BORPD rbh
SCNpilot_expt_1000_bf_scaffold_725_24
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29462..29803)
DNA (342bp) protein (114aa)
Divalent cation tolerance protein, CutA1 family n=38 Tax=Bordetella RepID=V8U6T8_BORPT
cutA; divalent cation tolerance protein; K03926 periplasmic divalent cation tolerance protein
Divalent cation tolerance protein, CutA1 family {ECO:0000313|EMBL:KDD49058.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_expt_1000_bf_scaffold_725_25
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29820..30629)
DNA (810bp) protein (270aa)
ABC transporter, permease protein n=34 Tax=Bordetella RepID=F4LGX0_BORPC rbh
nodJ; ABC transporter permease rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=568706 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 /; 18323).;"
SCNpilot_expt_1000_bf_scaffold_725_26
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30631..31596)
DNA (966bp) protein (322aa)
Nod factor export ATP-binding protein I {ECO:0000256|HAMAP-Rule:MF_01704}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01704};; Nodulation ATP-binding protein I {ECO:0000256|HAMAP-Rule:MF_01704}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
ABC, transporter, ATP-binding protein n=4 Tax=Bordetella RepID=Q7W9D3_BORPA rbh
nodI; ABC transporter ATP-binding protein; K09695 lipooligosaccharide transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_725_27
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31743..32840
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 RepID=S6BDF7_PSERE
DNA-binding protein {ECO:0000313|EMBL:KJK00523.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_725_28
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33129..34421
DNA (1293bp) protein (431aa)
d-amino-acid dehydrogenase (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase (Fragment) n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IUG3_9BURK rbh
Amino acid dehydrogenase {ECO:0000313|EMBL:KJK21192.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_expt_1000_bf_scaffold_725_29
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34428..36107)
DNA (1680bp) protein (560aa)
Dehydrogenase {ECO:0000313|EMBL:BAQ41439.1}; EC=1.1.1.151 {ECO:0000313|EMBL:BAQ41439.1};; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
choline dehydrogenase (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1] rbh
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031EF8A9 rbh
SCNpilot_expt_1000_bf_scaffold_725_30
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36185..37657)
DNA (1473bp) protein (491aa)
betB1; betaine aldehyde dehydrogenase BetB (EC:1.2.1.8); K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8] rbh
Betaine aldehyde dehydrogenase BetB {ECO:0000313|EMBL:AEI82570.1}; EC=1.2.1.8 {ECO:0000313|EMBL:AEI82570.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Betaine aldehyde dehydrogenase BetB n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GV70_CUPNN rbh
Displaying items 1-30 of 88 in total

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