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SCNpilot_expt_1000_bf_scaffold_898

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_898_1
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..512)
DNA (510bp) protein (170aa)
3-methylitaconate isomerase n=1 Tax=Lentibacillus jeotgali RepID=UPI00026267E2
hypothetical protein; K09788 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92334.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_898_2
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

732..2843
DNA (2112bp) protein (704aa)
elongation factor G (EC:3.6.5.3); K02355 elongation factor G rbh
Elongation factor G 1 n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=EFG1_BURXL rbh
Elongation factor G 1 {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G 1 {ECO:0000255|HAMAP-Rule:MF_00054};; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_1000_bf_scaffold_898_3
BJP_08E140C01_Spirochaeta_53_29, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(2840..3850)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H4Z5_METFK rbh
hypothetical protein rbh
Tax=BJP_08E140C01_Spirochaeta_53_29
SCNpilot_expt_1000_bf_scaffold_898_4
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3961..5091
DNA (1131bp) protein (377aa)
Permease n=1 Tax=Thauera sp. 63 RepID=N6X5V3_9RHOO rbh
ABC transporter permease {ECO:0000313|EMBL:KGY27226.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_898_5
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5282..6625)
DNA (1344bp) protein (448aa)
gdhA2; glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] rbh
Glutamate dehydrogenase n=1 Tax=Acinetobacter baumannii WC-141 RepID=K8ZZS8_ACIBA rbh
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1310791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii 742879.;"
SCNpilot_expt_1000_bf_scaffold_898_6
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6945..7259
DNA (315bp) protein (105aa)
Small multidrug resistance protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8REQ6_DESPD
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
Small multidrug resistance protein {ECO:0000313|EMBL:ADW19149.1}; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3).;"
SCNpilot_expt_1000_bf_scaffold_898_7
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7276..8082
DNA (807bp) protein (269aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
murI; glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
UPI0003D61AD0 related cluster n=1 Tax=unknown RepID=UPI0003D61AD0
SCNpilot_expt_1000_bf_scaffold_898_8
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8231..8776
DNA (546bp) protein (182aa)
folE2; GTP cyclohydrolase 2 (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] rbh
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
GTP cyclohydrolase 1 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HUV0_ACHXA rbh
SCNpilot_expt_1000_bf_scaffold_898_9
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9149..9937
DNA (789bp) protein (263aa)
ABC transporter ATP-binding protein n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0GAA6_9BURK rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EOA05597.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_898_10
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10002..10997
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CSQ7_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EIJ46650.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
putative ABC transporter substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_898_11
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10997..11845
DNA (849bp) protein (283aa)
ABC transporter permease n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002EE3329 rbh
ABC transporter permease {ECO:0000313|EMBL:EOA05599.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
putative ABC transporter permease protein rbh
SCNpilot_expt_1000_bf_scaffold_898_12
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11855..12637
DNA (783bp) protein (261aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:AIY39692.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AIY39692.1};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
3-oxoacyl-ACP reductase (EC:1.1.1.100) rbh
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM78 RepID=J3IRZ4_9PSED rbh
SCNpilot_expt_1000_bf_scaffold_898_13
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12719..13546
DNA (828bp) protein (276aa)
Transcriptional regulator, IclR family n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46V78_CUPPJ rbh
IclR family transcriptional regulator {ECO:0000313|EMBL:KJK23357.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
IclR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_898_14
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13551..14801
DNA (1251bp) protein (417aa)
Flavoprotein n=1 Tax=Azoarcus sp. KH32C RepID=H0PS01_9RHOO
NAD(FAD)-utilizing dehydrogenase {ECO:0000313|EMBL:KIF80608.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
flavoprotein
SCNpilot_expt_1000_bf_scaffold_898_15
Pseudomonas sp. M47T1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14858..15067
DNA (210bp) protein (70aa)
Heavy-metal-associated protein n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N531_9PSED
Heavy-metal-associated protein {ECO:0000313|EMBL:EIK96571.1}; TaxID=1179778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M47T1.;"
heavy metal transport/detoxification protein; K07213 copper chaperone
SCNpilot_expt_1000_bf_scaffold_898_16
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15034..16110)
DNA (1077bp) protein (359aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] rbh
DNA polymerase IV n=1 Tax=Burkholderia dolosa AUO158 RepID=A2W8Z4_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_898_17
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16136..16870)
DNA (735bp) protein (245aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:KCB36358.1}; EC=2.4.-.- {ECO:0000313|EMBL:KCB36358.1};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
waaE; lipopolysaccharide core biosynthesis glycosyl transferase (EC:2.-.-.-) rbh
Lipopolysaccharide core biosynthesis glycosyl transferase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KYR6_BORA1 rbh
SCNpilot_expt_1000_bf_scaffold_898_18
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17055..18473
DNA (1419bp) protein (473aa)
ATP-dependent RNA helicase n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5UE45_ALCXX rbh
rhlE; ATP-dependent RNA helicase rbh
ATP-dependent RNA helicase {ECO:0000313|EMBL:AHC45511.1}; TaxID=1216976 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NBRC 15126 = ATCC 27061.;"
SCNpilot_expt_1000_bf_scaffold_898_19
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18517..19395)
DNA (879bp) protein (293aa)
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018222};; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
aminoacyl-tRNA synthetase (EC:6.1.1.17); K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] rbh
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037B02B7 rbh
SCNpilot_expt_1000_bf_scaffold_898_20
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19395..20339)
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FB93_9BURK rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EHK64358.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_898_21
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20470..21171
DNA (702bp) protein (234aa)
Uncharacterized protein n=34 Tax=Bordetella RepID=F4L9I4_BORPC rbh
hypothetical protein; K06911 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIW95446.1}; TaxID=743278 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis B1920.;"
SCNpilot_expt_1000_bf_scaffold_898_22
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21302..22231
DNA (930bp) protein (310aa)
DnaJ domain-containing protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4YUT6_9BURK rbh
DnaJ domain-containing protein {ECO:0000313|EMBL:EJO33033.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
DnaJ domain-containing protein; K05516 curved DNA-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_898_23
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22234..22551
DNA (318bp) protein (106aa)
MerR family transcriptional regulator n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7SVV3_ALCXX
MerR family transcriptional regulator {ECO:0000313|EMBL:KGD89943.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
FIG00432169: hypothetical protein
SCNpilot_expt_1000_bf_scaffold_898_24
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22699..23541
DNA (843bp) protein (281aa)
IclR family transcriptional regulator n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QSS7_RALPI
IclR family transcriptional regulator
IclR family transcriptional regulator {ECO:0000313|EMBL:AGW93213.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCNpilot_expt_1000_bf_scaffold_898_25
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23541..24338
DNA (798bp) protein (266aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:AIY39696.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AIY39696.1};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
short-chain dehydrogenase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI00030954A1 rbh
short chain dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_898_26
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24331..26010
DNA (1680bp) protein (560aa)
ilvB; acetolactate synthase 1 large subunit (EC:2.2.1.6) rbh
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3D4X8_9BURK rbh
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase {ECO:0000313|EMBL:EJL84631.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
SCNpilot_expt_1000_bf_scaffold_898_27
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26090..27466
DNA (1377bp) protein (459aa)
betB1; nad+ dependent betaine aldehyde dehydrogenase (EC:1.2.1.8) rbh
NAD+ dependent betaine aldehyde dehydrogenase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R8S5_CUPTR rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:EYS86286.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
SCNpilot_expt_1000_bf_scaffold_898_28
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27481..28440
DNA (960bp) protein (320aa)
NADH dehydrogenase {ECO:0000313|EMBL:AIY39700.1}; EC=1.6.99.3 {ECO:0000313|EMBL:AIY39700.1};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
Putative ring-cleavage extradiol dioxygenase n=1 Tax=Herbaspirillum sp. CF444 RepID=J2LHJ5_9BURK rbh
glyoxalase/bleomycin resistance rbh
SCNpilot_expt_1000_bf_scaffold_898_29
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28449..28772
DNA (324bp) protein (108aa)
Uncharacterized protein n=2 Tax=Pandoraea RepID=V5UH19_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AJK48210.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae PG1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_898_30
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28772..28999
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Pandoraea RepID=V5UIQ7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AKC69814.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
hypothetical protein
Displaying items 1-30 of 33 in total

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