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SCNpilot_expt_1000_bf_scaffold_1385

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1385_1
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..1698
DNA (1698bp) protein (566aa)
ccoI; copper-exporting atpase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-exporting ATPase {ECO:0000313|EMBL:CAQ69807.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CAQ69807.1};; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
carbonate dehydratase n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00037C78F1
SCNpilot_expt_1000_bf_scaffold_1385_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1680..1892
DNA (213bp) protein (71aa)
Conserved hypothetical cytochrome oxidase maturation protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K552_AZOSB
ccoS; cytochrome oxidase maturation protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_1385_3
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1963..3432
DNA (1470bp) protein (490aa)
Cytochrome c oxidase, Cbb3-type, subunit I {ECO:0000313|EMBL:EIZ02162.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EIZ02162.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
ccoN; cytochrome C oxidase cbb3-type, subunit i (EC:1.9.3.1); K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1] rbh
Cytochrome c oxidase, Cbb3-type, subunit I n=1 Tax=Ralstonia sp. PBA RepID=I9W161_9RALS rbh
SCNpilot_expt_1000_bf_scaffold_1385_4
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3446..4081
DNA (636bp) protein (212aa)
Cbb3-type cytochrome oxidase, monoheme subunit II {ECO:0000313|EMBL:EIZ02163.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EIZ02163.1};; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
Cytochrome c oxidase subunit CcoO (EC:1.9.3.1) rbh
Cbb3-type cytochrome oxidase, monoheme subunit II n=1 Tax=Ralstonia sp. PBA RepID=I9BQI4_9RALS rbh
SCNpilot_expt_1000_bf_scaffold_1385_5
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4081..4263
DNA (183bp) protein (61aa)
Cytochrome C oxidase, Cbb3-type, CcoQ subunit {ECO:0000313|EMBL:KCB36824.1}; EC=1.9.3.1 {ECO:0000313|EMBL:KCB36824.1};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
Cytochrome C oxidase subunit n=35 Tax=Bordetella RepID=K0MW73_BORBM
cytochrome C oxidase subunit
SCNpilot_expt_1000_bf_scaffold_1385_6
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4260..5189
DNA (930bp) protein (310aa)
Cytochrome CBB3 n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QP32_RALPI rbh
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
putative cytochrome C oxidase subunit; K00406 cytochrome c oxidase cbb3-type subunit III rbh
SCNpilot_expt_1000_bf_scaffold_1385_7
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5186..6619
DNA (1434bp) protein (478aa)
Cytochrome C oxidase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9THN5_9RALS rbh
Cytochrome C oxidase {ECO:0000313|EMBL:AJW45105.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
cytochrome C oxidase accessory protein CcoG rbh
SCNpilot_expt_1000_bf_scaffold_1385_8
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6641..6823
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Ralstonia solanacearum UW551 RepID=A3RXD6_RALSL
FixH domain protein {ECO:0000313|EMBL:KCB36017.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
hypothetical protein; K09926 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1385_9
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6820..7080
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Ralstonia solanacearum CFBP2957 RepID=D8NJW5_RALSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBJ43337.1}; TaxID=859656 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CFBP2957.;"
SCNpilot_expt_1000_bf_scaffold_1385_10
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7106..7909
DNA (804bp) protein (268aa)
Putative inner membrane lipoprotein n=1 Tax=Ralstonia solanacearum K60-1 RepID=H5W924_RALSL
Membrane protein {ECO:0000313|EMBL:KHK58546.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. A12.;"
hypothetical protein; K09792 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1385_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7928..8578)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037E9A5D rbh
2-nitrobenzoate nitroreductase {ECO:0000313|EMBL:BAF56676.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
flavin reductase-like, FMN-binding rbh
SCNpilot_expt_1000_bf_scaffold_1385_12
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8614..9324)
DNA (711bp) protein (237aa)
ABC transporter ATP-binding protein n=1 Tax=Acidovorax avenae RepID=UPI00031F5D90 rbh
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADX45997.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_1385_13
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9341..10087)
DNA (747bp) protein (249aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K01995 branched-chain amino acid transport system ATP-binding protein
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:ADX45996.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ADX45996.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000369FBB7
SCNpilot_expt_1000_bf_scaffold_1385_14
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10080..11030)
DNA (951bp) protein (317aa)
Membrane spanning protein n=1 Tax=Pseudomonas fluorescens RepID=Q83V36_PSEFL rbh
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KGE68620.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1385_15
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11033..11944)
DNA (912bp) protein (304aa)
Membrane spanning protein n=1 Tax=Pseudomonas fluorescens RepID=Q83V37_PSEFL rbh
Membrane spanning protein {ECO:0000313|EMBL:BAC65300.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1385_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11941..12519)
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas fluorescens RepID=Q83V38_PSEFL
Putative uncharacterized protein {ECO:0000313|EMBL:BAC65299.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
NADPH-dependent FMN reductase
SCNpilot_expt_1000_bf_scaffold_1385_17
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12541..13713)
DNA (1173bp) protein (391aa)
Extracellular ligand-binding receptor n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120P9_POLSJ rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABE46993.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_expt_1000_bf_scaffold_1385_18
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13777..14292)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120Q0_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE46992.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_expt_1000_bf_scaffold_1385_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14442..15455
DNA (1014bp) protein (338aa)
Uncharacterized HTH-type transcriptional regulator HI1364 ORF2 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AFN7_RHIFH rbh
HTH-type transcriptional regulator HI1364 ORF2 rbh
Putative transcriptional regulator {ECO:0000313|EMBL:CCE99869.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1385_20
Pseudomonas sp. CF161, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15459..15896)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6KYV2_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EPL15060.1}; TaxID=911241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CF161.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1385_21
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15967..16728)
DNA (762bp) protein (254aa)
3-oxoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. H160 RepID=B5WJ09_9BURK
Tax=RBG_16_Actinobacteria_64_13_curated
SCNpilot_expt_1000_bf_scaffold_1385_22
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16763..18979)
DNA (2217bp) protein (739aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000382D638
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1385_23
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19031..19564)
DNA (534bp) protein (178aa)
2,4'-dihydroxyacetophenone dioxygenase n=1 Tax=Pseudomonas chlororaphis O6 RepID=I4XSY6_9PSED
2,4-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:AIC20485.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
dad; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1385_24
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19760..20776
DNA (1017bp) protein (339aa)
AraC family regulatory protein n=3 Tax=Burkholderia cenocepacia RepID=B4EG24_BURCJ
AraC family transcriptional regulator {ECO:0000313|EMBL:KER68595.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
AraC family regulatory protein
SCNpilot_expt_1000_bf_scaffold_1385_25
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20786..21691)
DNA (906bp) protein (302aa)
Membrane transport family protein 1 n=1 Tax=Achromobacter piechaudii HLE RepID=J4P3Q6_9BURK rbh
Membrane transport family protein 1 {ECO:0000313|EMBL:EJO28342.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
hypothetical protein; K07088 rbh
SCNpilot_expt_1000_bf_scaffold_1385_26
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21897..22538)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00037F1DF8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC19674.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_expt_1000_bf_scaffold_1385_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22566..23555)
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXQ7_ALIDB rbh
hypothetical protein rbh
Extra-cytoplasmic solute receptor family protein {ECO:0000313|EMBL:GAO24404.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_1000_bf_scaffold_1385_28
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23616..24710)
DNA (1095bp) protein (365aa)
tartrate dehydrogenase/decarboxylase ttuc (EC:1.1.1.83 1.1.1.93 4.1.1.73); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Putative tartrate dehydrogenase/decarboxylase ttuC {ECO:0000313|EMBL:CBJ35326.1}; EC=1.1.1.83 {ECO:0000313|EMBL:CBJ35326.1};; EC=1.1.1.93 {ECO:0000313|EMBL:CBJ35326.1};; EC=4.1.1.73 {ECO:0000313|EMBL:CBJ35326.1};; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
Putative tartrate dehydrogenase/decarboxylase ttuC n=1 Tax=Ralstonia solanacearum RepID=D8N123_RALSL
SCNpilot_expt_1000_bf_scaffold_1385_29
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24775..26193)
DNA (1419bp) protein (473aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
pyk; pyruvate kinase Pyk (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] rbh
Pyruvate kinase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GT55_CUPNN rbh
SCNpilot_expt_1000_bf_scaffold_1385_30
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26206..27330)
DNA (1125bp) protein (375aa)
hydroxypyruvate reductase; K00050 hydroxypyruvate reductase [EC:1.1.1.81]
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036AD99A
Hydroxypyruvate reductase {ECO:0000313|EMBL:KJK21442.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
Displaying items 1-30 of 37 in total

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