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SCNpilot_expt_1000_bf_scaffold_1627

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Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1627_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19..1173
DNA (1155bp) protein (385aa)
cydB; cytochrome d terminal oxidase, subunit II (EC:1.9.3.-)
Cytochrome d terminal oxidase, subunit II n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QBE3_9RHIZ
Cytochrome d ubiquinol oxidase subunit 2 {ECO:0000313|EMBL:KAJ36409.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_1627_2
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1194..1289
DNA (96bp) protein (32aa)
Putative exported protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KUE1_BORA1
Cyd operon protein YbgT
Cyd operon protein YbgT {ECO:0000313|EMBL:AFT71315.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
SCNpilot_expt_1000_bf_scaffold_1627_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1317..1922
DNA (606bp) protein (202aa)
SAM-dependent methyltransferase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000346000A
tehB; tellurite resistance protein TehB
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_1627_4
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2018..2230
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Acidovorax avenae RepID=UPI0003031375
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX46203.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
SCNpilot_expt_1000_bf_scaffold_1627_5
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2272..3408
DNA (1137bp) protein (379aa)
Pepsy-associated tm helix domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZQ0_9BURK
pepsy-associated tm helix domain-containing protein
Pepsy-associated tm helix domain-containing protein {ECO:0000313|EMBL:AFU45335.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1627_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3481..4212
DNA (732bp) protein (244aa)
GntR domain protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AXQ4_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:AIB15868.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
GntR domain protein
SCNpilot_expt_1000_bf_scaffold_1627_7
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4233..4973)
DNA (741bp) protein (247aa)
arylmalonate decarboxylase (EC:4.1.1.76); K01799 maleate isomerase [EC:5.2.1.1]
Asp/Glu/Hydantoin racemase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8U6_9PROT
Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:EHL95397.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_expt_1000_bf_scaffold_1627_8
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4984..5598)
DNA (615bp) protein (205aa)
N-carbamoylsarcosine amidase (EC:3.5.1.59)
N-carbamoylsarcosine amidase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A8U7_9PROT
N-carbamoylsarcosine amidase family protein {ECO:0000313|EMBL:EHL95398.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
SCNpilot_expt_1000_bf_scaffold_1627_9
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5595..6500)
DNA (906bp) protein (302aa)
carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Curvibacter lanceolatus RepID=UPI0003639CCF
Carboxyvinyl-carboxyphosphonate phosphorylmutase {ECO:0000313|EMBL:KJA11029.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
carboxyvinyl-carboxyphosphonate phosphorylmutase
SCNpilot_expt_1000_bf_scaffold_1627_10
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6497..7693)
DNA (1197bp) protein (399aa)
monooxygenase FAD-binding; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U0D0_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EAQ02221.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
SCNpilot_expt_1000_bf_scaffold_1627_11
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8005..8979
DNA (975bp) protein (325aa)
Extra-cytoplasmic solute receptor protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LC85_RALME
bug; ABC transporter substrate-binding protein
Extra-cytoplasmic solute receptor protein {ECO:0000313|EMBL:ABF12241.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_expt_1000_bf_scaffold_1627_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9025..10287)
DNA (1263bp) protein (421aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446, ECO:0000313|EMBL:CDM23832.1}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446, ECO:0000313|EMBL:CDM23832.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSL6_ALIDB
SCNpilot_expt_1000_bf_scaffold_1627_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10344..10841
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HLX0_ACHXA
Uncharacterized protein {ECO:0000313|EMBL:KGY28444.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1627_14
unknown

Not on your lists

comp(10849..11949)
DNA (1101bp) protein (367aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1627_15
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12265..12633)
DNA (369bp) protein (123aa)
Cytochrome C-552 1 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1N9_9BURK
Cytochrome C-552 1 {ECO:0000313|EMBL:EHK67917.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
cytochrome C-552 1
SCNpilot_expt_1000_bf_scaffold_1627_16
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12645..13004)
DNA (360bp) protein (120aa)
Cytochrome C n=39 Tax=Bordetella RepID=V8TZ42_BORPT
cytochrome
Putative cytochrome {ECO:0000313|EMBL:CAE38762.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
SCNpilot_expt_1000_bf_scaffold_1627_17
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13295..14137
DNA (843bp) protein (281aa)
ATPase, AAA family n=1 Tax=Bordetella pertussis CHLA-20 RepID=V8W9W8_BORPT
ATP-binding protein
Putative ATP-binding protein {ECO:0000313|EMBL:CCN24487.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_expt_1000_bf_scaffold_1627_18
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14800..15420
DNA (621bp) protein (207aa)
Protein containing von Willebrand factor type A(VWA) domain n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0KCL4_CUPNH
coxE2; von Willebrand factor A; K09989 hypothetical protein
von Willebrand factor A {ECO:0000313|EMBL:EYS93830.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
SCNpilot_expt_1000_bf_scaffold_1627_19
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15497..18283
DNA (2787bp) protein (929aa)
Peptidase, M16 family {ECO:0000313|EMBL:KCB41486.1}; EC=3.4.24.- {ECO:0000313|EMBL:KCB41486.1};; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
zinc protease; K07263 zinc protease [EC:3.4.24.-] rbh
Putative zinc protease n=3 Tax=Bordetella bronchiseptica RepID=K4QKB0_BORBO rbh
SCNpilot_expt_1000_bf_scaffold_1627_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18273..18866)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037DFD0A
Uncharacterized protein {ECO:0000313|EMBL:EER61791.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1627_21
Brenneria sp. EniD312, Brenneria, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18957..20468)
DNA (1512bp) protein (504aa)
Putative uncharacterized protein n=1 Tax=Brenneria sp. EniD312 RepID=G7LVQ0_9ENTR rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHD19958.1}; TaxID=598467 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Brenneria.;" source="Brenneria sp. EniD312.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1627_22
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20479..20937)
DNA (459bp) protein (153aa)
Putative transmembrane protein putative transporter, APC superfamily n=2 Tax=Cupriavidus RepID=Q1LQ64_RALME
putative transmembrane protein; putative transporter, APC superfamily
Putative transmembrane protein putative transporter, APC superfamily {ECO:0000313|EMBL:ABF07712.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_expt_1000_bf_scaffold_1627_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20992..21996)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00035DD6F3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD33539.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
SCNpilot_expt_1000_bf_scaffold_1627_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22014..23591)
DNA (1578bp) protein (526aa)
Rhodanese domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVT5_VARPS
Variovorax paradoxus strain MEDvA23 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ34700.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
rhodanese domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1627_25
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24025..24624
DNA (600bp) protein (200aa)
Transcriptional regulator n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GIU6_9BURK
Transcriptional regulator {ECO:0000313|EMBL:ESH90071.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1627_26
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24765..25844
DNA (1080bp) protein (360aa)
Putative uncharacterized protein n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5TZV2_ALCXX rbh
Uncharacterized protein {ECO:0000313|EMBL:EFV87742.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
putative hemagglutinin-like protein
SCNpilot_expt_1000_bf_scaffold_1627_27
Bacillus sonorensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25831..26049
DNA (219bp) protein (73aa)
PrpF protein involved in 2-methylcitrate cycle n=1 Tax=Bacillus sonorensis L12 RepID=M5P697_9BACI
PrpF protein involved in 2-methylcitrate cycle {ECO:0000313|EMBL:EME74968.1}; TaxID=1274524 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sonorensis L12.;"
hypothetical protein; K09788 hypothetical protein
Displaying 27 items

View Taxonomy