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SCNpilot_expt_1000_bf_scaffold_1802

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1802_1
unknown

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1..123
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1802_2
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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288..1271
DNA (984bp) protein (328aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNB2_9SPHN
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KIC55727.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_expt_1000_bf_scaffold_1802_3
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1268..1600
DNA (333bp) protein (111aa)
Conjugal transfer protein TrbC n=2 Tax=Oligotropha carboxidovorans RepID=B6JA74_OLICO
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KIC55728.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
trbC; putative conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_expt_1000_bf_scaffold_1802_4
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1600..1881
DNA (282bp) protein (94aa)
conjugal transfer protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003144824
Conjugal transfer protein {ECO:0000313|EMBL:KIC55729.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
conjugal transfer protein TrbB; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_1802_5
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1894..4347
DNA (2454bp) protein (818aa)
AAA ATPase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSC9_PARL1 rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:KIC55730.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_expt_1000_bf_scaffold_1802_6
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4350..5117
DNA (768bp) protein (256aa)
conjugal transfer protein TrbJ n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FC56
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KIC55731.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
conjugal transfer protein TrbJ
SCNpilot_expt_1000_bf_scaffold_1802_7
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5128..5412
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QQ93_BREDI
Conjugal transfer protein TrbK {ECO:0000313|EMBL:KIC55732.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1802_8
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5416..6771
DNA (1356bp) protein (452aa)
Conjugal transfer protein TrbL n=2 Tax=Oligotropha carboxidovorans RepID=B6JA69_OLICO rbh
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KIC55733.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
SCNpilot_expt_1000_bf_scaffold_1802_9
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6768..7457
DNA (690bp) protein (230aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JA68_OLICO rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KIC55734.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
trbF1; conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
SCNpilot_expt_1000_bf_scaffold_1802_10
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7454..8434
DNA (981bp) protein (327aa)
Conjugal transfer protein TrbG n=2 Tax=Oligotropha carboxidovorans RepID=B6JA67_OLICO rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIC55735.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9 rbh
SCNpilot_expt_1000_bf_scaffold_1802_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8431..9603
DNA (1173bp) protein (391aa)
Conjugal transfer protein TrbI n=2 Tax=Oligotropha carboxidovorans RepID=B6JA66_OLICO rbh
trbI1; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10 rbh
Conjugal transfer protein TrbI {ECO:0000313|EMBL:AEI05059.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_1802_12
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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9605..9844
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BHI5_OLICM
hypothetical protein
Uncharacterized conserved small protein-like protein {ECO:0000313|EMBL:ADZ68712.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_1802_13
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9777..10766)
DNA (990bp) protein (330aa)
Transcriptional regulator, LysR family n=3 Tax=Oligotropha carboxidovorans RepID=B6JA65_OLICO rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:KIC58072.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
LysR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_1802_14
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10910..11470)
DNA (561bp) protein (187aa)
zinc-binding dehydrogenase n=1 Tax=Erwinia carotovora RepID=UPI0001A435D3
Zinc-binding dehydrogenase {ECO:0000313|EMBL:KHT30873.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora; subsp. carotovora).;"
alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1802_15
Rhizobium sp. NT-26, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11467..12663)
DNA (1197bp) protein (399aa)
Drug resistance transporter Bcr/CflA subfamily n=1 Tax=Rhizobium sp. RepID=L0NND8_RHISP
Drug resistance transporter Bcr/CflA subfamily {ECO:0000313|EMBL:CCF22391.1}; TaxID=1125847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. NT-26.;"
MFS transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
SCNpilot_expt_1000_bf_scaffold_1802_16
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13753..14259)
DNA (507bp) protein (169aa)
UPI0003CF48C9 related cluster n=2 Tax=unknown RepID=UPI0003CF48C9
Transposase {ECO:0000313|EMBL:EJL54191.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
transposase IS116/IS110/IS902; K07486 transposase
SCNpilot_expt_1000_bf_scaffold_1802_17
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14329..14919)
DNA (591bp) protein (197aa)
Transposase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98AJ3_RHILO
transposase; K07486 transposase
Transposase {ECO:0000313|EMBL:BAB52336.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_1802_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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15171..16367
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000365F58B
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_1802_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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16377..17639
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003627905
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_1802_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17632..18357
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036126B2
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_1802_21
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18413..18865
DNA (453bp) protein (151aa)
MerR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBF3_9PROT
MerR family transcriptional regulator {ECO:0000313|EMBL:EKE67944.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
cueR; DNA-binding transcriptional activator of copper-responsive regulon genes
SCNpilot_expt_1000_bf_scaffold_1802_22
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18862..19080
DNA (219bp) protein (73aa)
MerR family transcriptional regulator n=1 Tax=Oceanibaculum indicum P24 RepID=K2JBF3_9PROT
MerR family transcriptional regulator {ECO:0000313|EMBL:EKE67944.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
cation translocating P-type ATPase
SCNpilot_expt_1000_bf_scaffold_1802_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19270..19752
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2L7S3_9PROT
hypothetical protein; K06196 cytochrome c-type biogenesis protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying 23 items

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