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SCNpilot_expt_1000_bf_scaffold_639

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_639_1
unknown

Not on your lists

3..383
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_639_2
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(380..946)
DNA (567bp) protein (189aa)
UPF0301 protein AZOBR_150044 n=2 Tax=Azospirillum brasilense Sp245 RepID=G8AN14_AZOBR
hypothetical protein
UPF0301 protein ABAZ39_04585 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
SCNpilot_expt_1000_bf_scaffold_639_3
R_Gammaproteobacteria_42_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1052..2044)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036BB749
hypothetical protein; K01989 putative ABC transport system substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_42_10_curated
SCNpilot_expt_1000_bf_scaffold_639_4
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2300..2602
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UJP3_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:EYF02978.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_639_5
Thermus sp. 2.9, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

2592..4262
DNA (1671bp) protein (557aa)
actetate permease n=1 Tax=Thermus islandicus RepID=UPI0003B70D7C rbh
Acetate permease {ECO:0000313|EMBL:KHG66172.1}; TaxID=1577051 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus sp. 2.9.;"
cation:acetate symporter ActP rbh
SCNpilot_expt_1000_bf_scaffold_639_6
unknown

Not on your lists

4259..4963
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_639_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5008..7668)
DNA (2661bp) protein (887aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=1 Tax=Oceanibaculum indicum P24 RepID=K2IX30_9PROT
SCNpilot_expt_1000_bf_scaffold_639_8
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7671..8711)
DNA (1041bp) protein (347aa)
Protein RecA n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPM0_9PROT rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
recA; Recombinase A (recA); K03553 recombination protein RecA
SCNpilot_expt_1000_bf_scaffold_639_9
unknown

Not on your lists

9276..10013
DNA (738bp) protein (246aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_639_10
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10099..11019)
DNA (921bp) protein (307aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Riboflavin biosynthesis protein RibF n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IGE5_XANP2
SCNpilot_expt_1000_bf_scaffold_639_11
unknown

Not on your lists

comp(11043..11195)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_639_12
CG_Omnitr_05, Omnitrophica, Bacteria

Not on your lists

comp(11168..12055)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Thauera aminoaromatica S2 RepID=N6Z061_9RHOO
hypothetical protein
Tax=CG_Omnitr_05
SCNpilot_expt_1000_bf_scaffold_639_13
unknown

Not on your lists

comp(12110..12535)
DNA (426bp) protein (142aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_639_14
Rickettsia endosymbiont of Ixodes pacificus, Rickettsia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12528..14084)
DNA (1557bp) protein (519aa)
seryl-tRNA synthetase (EC:6.1.1.11) rbh
Bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase n=1 Tax=Rickettsia monacensis IrR/Munich RepID=U6EH27_9RICK rbh
Methyltransferase domain protein {ECO:0000313|EMBL:KJW02405.1}; TaxID=1133329 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia.;" source="Rickettsia endosymbiont of Ixodes pacificus.;"
SCNpilot_expt_1000_bf_scaffold_639_15
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14262..15272)
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
glyceraldehyde-3-phosphate dehydrogenase; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E5164D
SCNpilot_expt_1000_bf_scaffold_639_16
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15275..17281)
DNA (2007bp) protein (669aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
cbbT2; transketolase (EC:2.2.1.1)
transketolase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035FF1E5
SCNpilot_expt_1000_bf_scaffold_639_17
Chaetomium thermophilum, Chaetomium, Sordariales, Sordariomycetidae, Ascomycota, Fungi

Not on your lists

17460..17771
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) RepID=G0S393_CHATD
Putative uncharacterized protein {ECO:0000313|EMBL:EGS22476.1}; TaxID=759272 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Chaetomiaceae; Chaetomium.;" source="Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719).;"
Hypothetical protein CBG22657
SCNpilot_expt_1000_bf_scaffold_639_18
Pantoea agglomerans, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17801..18154
DNA (354bp) protein (118aa)
cyp144A4; cytochrome P450 144A4 Cyp144A4 (EC:1.14.-.-)
PE-PGRS family protein n=1 Tax=Mycobacterium rhodesiae JS60 RepID=G4HRG9_MYCRH
Uncharacterized protein {ECO:0000313|EMBL:KDA93475.1}; TaxID=1408177 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea; Pantoea agglomerans group.;" source="Pantoea agglomerans Eh318.;"
SCNpilot_expt_1000_bf_scaffold_639_19
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18433..19443
DNA (1011bp) protein (337aa)
Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G618_9RHIZ
Bacterial regulatory protein LysR, HTH motif:LysR substrate binding domain {ECO:0000313|EMBL:EAU42896.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_639_20
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19733..20662
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Robiginitomaculum antarcticum RepID=UPI000366BFAB
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:EGY01475.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_639_21
unknown

Not on your lists

21264..21983
DNA (720bp) protein (240aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_639_22
Rickettsiella grylli, Rickettsiella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22022..23356)
DNA (1335bp) protein (445aa)
Amino acid permease family protein n=1 Tax=Rickettsiella grylli RepID=A8PKW8_9COXI
Amino acid permease family protein {ECO:0000313|EMBL:EDP45978.1}; TaxID=59196 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Rickettsiella.;" source="Rickettsiella grylli.;"
adiC-A; arginine/agmatine antiporter; K03759 arginine:agmatine antiporter
SCNpilot_expt_1000_bf_scaffold_639_23
R_Chlamydiae_49_12, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(23384..24700)
DNA (1317bp) protein (439aa)
Arginine/agmatine antiporter n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L8H8_SIMNZ rbh
adiC-A; arginine/agmatine antiporter; K03759 arginine:agmatine antiporter rbh
Tax=RIFCSPLOWO2_02_FULL_Chlamydiae_49_12_curated
SCNpilot_expt_1000_bf_scaffold_639_24
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24884..25597
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2L986_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:AJD53877.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
hypothetical protein; K06890
SCNpilot_expt_1000_bf_scaffold_639_25
Acetobacter cibinongensis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25638..26144
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 RepID=H1US86_ACEPA
Uncharacterized protein {ECO:0000313|EMBL:GAN59043.1}; TaxID=1231339 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter cibinongensis 4H-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_639_26
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

26134..27261
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) RepID=Q4UMY4_RICFE
Uncharacterized protein {ECO:0000313|EMBL:CDZ81531.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_639_27
Chlamydia sp. 'Rubis', Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

27233..28363
DNA (1131bp) protein (377aa)
Putative glycosyltransferase n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GEH7_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:CDZ81531.1}; TaxID=1444712 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia sp. 'Rubis'.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_639_28
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(28386..29231)
DNA (846bp) protein (282aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
phosphomethylpyrimidine kinase n=1 Tax=Spirosoma panaciterrae RepID=UPI00035C142D
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:KER10719.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
SCNpilot_expt_1000_bf_scaffold_639_29

Not on your lists

comp(29232..30431)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EFP9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE08898.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
proP1; Proline/betaine transporter; K03762 MFS transporter, MHS family, proline/betaine transporter
SCNpilot_expt_1000_bf_scaffold_639_30
Wolbachia sp. SYDL, Wolbachia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30578..31546)
DNA (969bp) protein (323aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=588441 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Wolbachieae; Wolbachia.;" source="Wolbachia sp. SYDL.;"
bioB; biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6] rbh
Biotin synthase n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4YZR6_9RICK rbh
Displaying items 1-30 of 38 in total

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