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SCNpilot_expt_1000_bf_scaffold_1091

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1091_1
unknown

Not on your lists

2..172
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_2
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1213..1644)
DNA (432bp) protein (144aa)
RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
RNA pyrophosphohydrolase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036A3393
rppH; nudix family hydrolase
SCNpilot_expt_1000_bf_scaffold_1091_3
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1673..2863)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI000365AB1A
Uncharacterized protein {ECO:0000313|EMBL:GAK34871.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
hypothetical protein; K09798 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1091_4
CG_Alphaprot_01, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2941..4428)
DNA (1488bp) protein (496aa)
Carboxyl-terminal protease (EC:3.4.21.102)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003796E3C
Tax=CG_Alphaprot_01
SCNpilot_expt_1000_bf_scaffold_1091_5
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4416..5519)
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00037CB3E6
Putative metallopeptidase {ECO:0000313|EMBL:CCQ74854.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
peptidase M23B
SCNpilot_expt_1000_bf_scaffold_1091_6
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5516..7057)
DNA (1542bp) protein (514aa)
phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=uncultured bacterium RepID=K2DTJ0_9BACT
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_1000_bf_scaffold_1091_7
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7225..8130
DNA (906bp) protein (302aa)
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Tyrosine recombinase XerD id=2697450 bin=GWA1_Alphaproteobacteria_45_9 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
xerD; site-specific tyrosine recombinase
SCNpilot_expt_1000_bf_scaffold_1091_8
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8289..9050
DNA (762bp) protein (254aa)
UPF0176 protein K529_10337 n=1 Tax=Ruegeria mobilis F1926 RepID=R0DT64_9RHOB
UPF0176 protein K529_10337 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1265309 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria mobilis F1926.;"
rhodanese-like protein; K07146 UPF0176 protein
SCNpilot_expt_1000_bf_scaffold_1091_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9143..10300)
DNA (1158bp) protein (386aa)
Chaperone protein DnaJ n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=DNAJ_RHOCS rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
dnaJ; chaperone protein DnaJ; K03686 molecular chaperone DnaJ rbh
SCNpilot_expt_1000_bf_scaffold_1091_10
unknown

Not on your lists

comp(10335..10529)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10685..12622)
DNA (1938bp) protein (646aa)
Chaperone protein DnaK n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z420_AZOL4
dnaK; Chaperone protein, heat shock protein (HSP70); K04043 molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_1091_12
unknown

Not on your lists

comp(12745..13221)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_13
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13855..14682)
DNA (828bp) protein (276aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV43_9DELT
SCNpilot_expt_1000_bf_scaffold_1091_14
unknown

Not on your lists

comp(14756..15127)
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_15
unknown

Not on your lists

15198..15803
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_16
unknown

Not on your lists

comp(15708..15914)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_17
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15892..16836)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4NJZ3_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:ESQ75474.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
integrase
SCNpilot_expt_1000_bf_scaffold_1091_18
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16833..17120)
DNA (288bp) protein (96aa)
Uncharacterized protein (Fragment) n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4NQ55_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ75475.1}; Flags: Fragment;; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
transposase IS3/IS911 family protein
SCNpilot_expt_1000_bf_scaffold_1091_19
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17295..17759
DNA (465bp) protein (155aa)
17 kDa surface antigen n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJ88_TISMK
omp; 17 kDa surface antigen
17 kDa surface antigen {ECO:0000313|EMBL:AFK52826.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_1091_20
unknown

Not on your lists

comp(17903..19993)
DNA (2091bp) protein (697aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_21
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20084..20458)
DNA (375bp) protein (125aa)
Response regulator receiver protein n=2 Tax=Pseudovibrio RepID=G8PNJ0_PSEUV
response regulator receiver protein; K11443 two-component system, cell cycle response regulator DivK
Response regulator receiver protein {ECO:0000313|EMBL:AEV38295.1}; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
SCNpilot_expt_1000_bf_scaffold_1091_22
Bartonella bovis, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20618..20785
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=RL33_MESSB
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1094491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella bovis 91-4.;"
SCNpilot_expt_1000_bf_scaffold_1091_23
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20861..21253
DNA (393bp) protein (131aa)
acyl-CoA thioester hydrolase n=1 Tax=Roseomonas sp. B5 RepID=UPI00031E678C
Acyl-CoA thioester hydrolase {ECO:0000313|EMBL:EWY39406.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
putative acyl-CoA thioesterase
SCNpilot_expt_1000_bf_scaffold_1091_24
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21265..21810)
DNA (546bp) protein (182aa)
hypothetical protein COdytL_00495 id=2451658 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_expt_1000_bf_scaffold_1091_25
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21828..22241)
DNA (414bp) protein (138aa)
cell wall hydrolyses n=1 Tax=Candidatus Odyssella thessalonicensis RepID=UPI000225C13A
Uncharacterized protein {ECO:0000313|EMBL:AIK96408.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1091_26
unknown

Not on your lists

comp(22291..23163)
DNA (873bp) protein (291aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_27
unknown

Not on your lists

comp(23185..24678)
DNA (1494bp) protein (498aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1091_28
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24896..25846
DNA (951bp) protein (317aa)
mpsA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823}; Short=ACCase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000255|HAMAP-Rule:MF_00823};; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=ACCA_MAGSA rbh
SCNpilot_expt_1000_bf_scaffold_1091_29
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25904..26749
DNA (846bp) protein (282aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC:6.4.1.2); K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TX24_9PROT
SCNpilot_expt_1000_bf_scaffold_1091_30
endosymbiont of Acanthamoeba sp. UWC8, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26746..27807)
DNA (1062bp) protein (354aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=86106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Holosporaceae.;" source="endosymbiont of Acanthamoeba sp. UWC8.;"
glycoside hydrolase family 3 domain-containing protein; K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
Glycoside hydrolase family 3 domain protein id=2438833 bin=GWA1_Alphaproteobacteria_45_9 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
Displaying items 1-30 of 36 in total

View Taxonomy