name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_836_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
473..1747
|
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B84
Uncharacterized protein {ECO:0000313|EMBL:EEF62673.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_836_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1812..2096)
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHA7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48364.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_836_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2709..3914
|
Transporter, monovalent cation:proton antiporter-2 (CPA2) family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLA5_9PROT
rbh
Sodium:proton exchanger {ECO:0000313|EMBL:KIO48897.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Sodium/hydrogen exchanger
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3911..5026
|
Putative glutamate--cysteine ligase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_01609, ECO:0000256|SAAS:SAAS00078222};; Gamma-glutamylcysteine synthetase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Carboxylate-amine ligase EBAPG3_24820 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKM6_9PROT
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5251..6024
|
Glutamine amidotransferase, class I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVT0_9PROT
rbh
Glutamine amidotransferase, class I {ECO:0000313|EMBL:CCU63440.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
peptidase C26; K07010 putative glutamine amidotransferase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6102..7565)
|
Threonine synthase {ECO:0000313|EMBL:CCU63450.1}; EC=4.2.3.1 {ECO:0000313|EMBL:CCU63450.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Threonine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVT9_9PROT
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7687..9057)
|
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Homoserine dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ63_9PROT
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9080..10372)
|
Aspartate aminotransferase {ECO:0000313|EMBL:CCU63452.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CCU63452.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
aminotransferase AlaT (EC:2.6.1.2); K14260 alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
rbh
Aspartate aminotransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR1_9PROT
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10534..10899
|
Membrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN6_9PROT
Membrane protein {ECO:0000313|EMBL:CCU63454.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein; K09008 hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_836_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10954..12144)
|
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVU5_9PROT
rbh
Histidine kinase {ECO:0000313|EMBL:KIO48903.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
response regulator receiver/diguanylate phosphodiesterase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12421..16593)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
InterPro IPR000014:IPR001789:IPR002106:IPR002570:IPR003594:IPR00366 0 :IPR003661:IPR004358:IPR005467 COGs COG0642 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR3_9PROT
rbh
multi-sensor hybrid histidine kinase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16590..17867)
|
Urea ABC transporter, urea binding protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLB9_9PROT
rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO48905.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ABC transporter, periplasmic binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18112..19056)
|
Deacetylases, including yeast histone deacetylase and acetoin utilization protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKN9_9PROT
rbh
Deacetylases, including yeast histone deacetylase and acetoin utilization protein {ECO:0000313|EMBL:CCU63459.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
histone deacetylase superfamily protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19453..21393
|
GGDEF and EAL domain proteins n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVV0_9PROT
rbh
Diguanylate cyclase {ECO:0000313|EMBL:KIO48907.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
diguanylate cyclase/phosphodiesterase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21565..23721
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ72_9PROT
rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48908.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23828..24847
|
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
Fructose-bisphosphate aldolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKR7_9PROT
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
|
|
SCNpilot_expt_1000_bf_scaffold_836_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24884..25276)
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DS49_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62205.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_836_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25573..26688
|
Probable transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKH8_9PROT
rbh
Probable transmembrane protein {ECO:0000313|EMBL:CCU63369.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
transmembrane protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26769..28127)
|
Cardiolipin synthetase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLC4_9PROT
rbh
Cardiolipin synthase {ECO:0000313|EMBL:KIO48910.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
|
|
SCNpilot_expt_1000_bf_scaffold_836_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28956..29609)
|
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVV6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63465.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
YbhB and YbcL; K06910
|
|
SCNpilot_expt_1000_bf_scaffold_836_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29606..30055)
|
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLC8_9PROT
Histidine kinase {ECO:0000313|EMBL:KIO48911.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
signal-transduction protein
|
|
SCNpilot_expt_1000_bf_scaffold_836_22
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30199..30657)
|
Heat shock protein Hsp20 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9V1_NITMU
heat shock protein Hsp20; K13993 HSP20 family protein
Heat shock protein Hsp20 {ECO:0000313|EMBL:ABB74470.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
|
|
SCNpilot_expt_1000_bf_scaffold_836_23
unknown
|
Not on your lists |
comp(30748..31029)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_836_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31226..32038)
|
Kazal-type serine protease inhibitor domain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLD1_9PROT
rbh
Kazal-type serine protease inhibitor domain {ECO:0000313|EMBL:CCU63473.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
proteinase inhibitor I1, Kazal
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(32349..33758)
|
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:CCU63177.1}; EC=2.1.1.77 {ECO:0000313|EMBL:CCU63177.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK63_9PROT
rbh
erythromycin esterase
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33760..34422)
|
Phosphoribosyl transferase domain protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUZ7_9PROT
rbh
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:CCU63175.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_836_27
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
34768..35928
|
Putative rRNA/ tRNA methylase n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QJK7_9DELT
Putative rRNA/ tRNA methylase {ECO:0000313|EMBL:EPX61479.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
rsmC; HemK family modification methylase PA2179
|