ggKbase home page

SCNpilot_expt_1000_bf_scaffold_564

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_564_1

Not on your lists

comp(319..519)
DNA (201bp) protein (67aa)
Integrase family protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C333_SPHS2
Uncharacterized protein {ECO:0000313|EMBL:KKL90697.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
integrase
SCNpilot_expt_1000_bf_scaffold_564_2
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(516..1391)
DNA (876bp) protein (292aa)
Integron integrase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1G7_9SPHI
Integron integrase {ECO:0000313|EMBL:EEI90876.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
integrase
SCNpilot_expt_1000_bf_scaffold_564_3
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1741..2112
DNA (372bp) protein (124aa)
Putative uncharacterized protein id=4527460 bin=GWA2_Flavobacterium_35_26 species=Riemerella anatipestifer genus=Riemerella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB68966.1}; TaxID=1034807 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
SCNpilot_expt_1000_bf_scaffold_564_4
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2205..3053
DNA (849bp) protein (283aa)
Heavy metal transport/detoxification protein n=4 Tax=Riemerella anatipestifer RepID=F0TL67_RIEAR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFD56968.1}; TaxID=693978 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 /; NCTC 11014).;"
SCNpilot_expt_1000_bf_scaffold_564_5
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4496..5221
DNA (726bp) protein (242aa)
Copper-exporting ATPase {ECO:0000313|EMBL:EEI92365.1}; EC=3.6.3.4 {ECO:0000313|EMBL:EEI92365.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
heavy metal translocating p-type atpase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-exporting ATPase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FXC4_9SPHI
SCNpilot_expt_1000_bf_scaffold_564_6
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5232..7502
DNA (2271bp) protein (757aa)
Copper-resistance protein, CopA family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8V8_9FLAO
Copper-resistance protein, CopA family {ECO:0000313|EMBL:EFK35869.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
multicopper oxidase type 3 rbh
SCNpilot_expt_1000_bf_scaffold_564_7
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

7865..8497
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00037F7DBC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
SCNpilot_expt_1000_bf_scaffold_564_8

Not on your lists

8726..9043
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W7Y4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU11097.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_1000_bf_scaffold_564_9

Not on your lists

9046..10236
DNA (1191bp) protein (397aa)
Nucleoside 2-deoxyribosyltransferase n=1 Tax=uncultured organism RepID=T1W8K1_9ZZZZ rbh
Nucleoside 2-deoxyribosyltransferase {ECO:0000313|EMBL:AGU11098.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
nucleoside 2-deoxyribosyltransferase family protein
SCNpilot_expt_1000_bf_scaffold_564_10

Not on your lists

10224..10823
DNA (600bp) protein (200aa)
ExsB n=1 Tax=uncultured organism RepID=T1W9B1_9ZZZZ rbh
ExsB {ECO:0000313|EMBL:AGU11099.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein; K06920 queuosine biosynthesis protein QueC
SCNpilot_expt_1000_bf_scaffold_564_11
unknown

Not on your lists

comp(10833..11090)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_564_12
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11188..11991
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S8U5_PEDSD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADY52426.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_564_13
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12060..12512
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RST7_LEAB4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ16776.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_1000_bf_scaffold_564_14
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12525..12791
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SEA2_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY54024.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_564_15
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12778..13041
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SEA3_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY54025.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_564_16
unknown

Not on your lists

13053..13283
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_564_17
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13465..13887)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SEA4_PEDSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY54026.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_564_18
unknown

Not on your lists

comp(14641..15021)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_564_19
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15198..16292
DNA (1095bp) protein (365aa)
AAA ATPase, central protein n=1 Tax=uncultured bacterium RepID=K1YYV9_9BACT rbh
Putative ATPase {ECO:0000313|EMBL:GAE66756.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_564_20
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16296..18650
DNA (2355bp) protein (785aa)
Uncharacterized protein n=1 Tax=Bacteroidales bacterium CF RepID=U5Q5H5_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:GAE66757.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_564_21
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18923..19183
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Leptotrichia wadei F0279 RepID=U2PX57_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:GAE66758.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_564_22
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19207..19533
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S984_PEDSD
Uncharacterized protein {ECO:0000313|EMBL:GAE66759.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_564_23
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19559..19732
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QYB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:GAE66760.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_564_24
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20374..22548)
DNA (2175bp) protein (725aa)
Virulence-associated E family protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RSV1_LEAB4 rbh
virulence-associated e family protein rbh
Virulence-associated E family protein {ECO:0000313|EMBL:ADQ16790.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_1000_bf_scaffold_564_25
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22588..22869)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RSV2_LEAB4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ16791.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_1000_bf_scaffold_564_26
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22959..23867)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SEB5_PEDSD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADY54037.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_564_27
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23978..25738)
DNA (1761bp) protein (587aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.13.3) rbh
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S645_PEDSD rbh
SCNpilot_expt_1000_bf_scaffold_564_28
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25752..26876)
DNA (1125bp) protein (375aa)
osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] rbh
Osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S644_PEDSD rbh
Osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD {ECO:0000313|EMBL:ADY52147.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_564_29
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26876..27952)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S643_PEDSD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADY52146.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_564_30
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27958..28518)
DNA (561bp) protein (187aa)
potassium-transporting ATPase, C subunit (EC:3.6.3.12); K01548 K+-transporting ATPase ATPase C chain [EC:3.6.3.12] rbh
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" so
Potassium-transporting ATPase C chain n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S642_PEDSD rbh
Displaying items 1-30 of 63 in total

View Taxonomy