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SCNpilot_expt_1000_bf_scaffold_1070

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1070_1
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1..858
DNA (858bp) protein (286aa)
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XS59_PEDHD
NodT family RND efflux system outer membrane lipoprotein
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ACU03404.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_1070_2
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

902..2080
DNA (1179bp) protein (393aa)
Transporter, major facilitator family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W8R3_9FLAO rbh
Membrane protein {ECO:0000313|EMBL:KFF12982.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
putative transport protein; K08156 MFS transporter, DHA1 family, arabinose polymer transporter rbh
SCNpilot_expt_1000_bf_scaffold_1070_3
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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2603..3607
DNA (1005bp) protein (335aa)
Putative membrane protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W7R1_9FLAO
Putative inner membrane transporter YedA {ECO:0000313|EMBL:CEJ68625.1}; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1070_4
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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3614..4561
DNA (948bp) protein (316aa)
Cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) {ECO:0000313|EMBL:EAY25531.1}; EC=2.5.1.47 {ECO:0000313|EMBL:EAY25531.1};; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
putative cysteine synthase B; K12339 cysteine synthase B [EC:2.5.1.47] rbh
cysteine synthase n=1 Tax=Flexithrix dorotheae RepID=UPI000366ACAC rbh
SCNpilot_expt_1000_bf_scaffold_1070_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4545..4970
DNA (426bp) protein (142aa)
Mov34/MPN/PAD-1 family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK64_NIAKG
Mov34/MPN/PAD-1 family protein
Mov34/MPN/PAD-1 family protein {ECO:0000313|EMBL:AEV96498.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1070_6
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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4983..6404
DNA (1422bp) protein (474aa)
Sulfur carrier protein adenylyltransferase ThiF n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZVV4_9BACT rbh
Sulfur carrier protein adenylyltransferase ThiF {ECO:0000313|EMBL:EON78280.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
UBA/THIF-type NAD/FAD binding protein; K11996 adenylyltransferase and sulfurtransferase rbh
SCNpilot_expt_1000_bf_scaffold_1070_7
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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6658..7296
DNA (639bp) protein (213aa)
Peroxidase n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5C303_9BACT rbh
Peroxidase {ECO:0000313|EMBL:ERM83296.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
peroxidase
SCNpilot_expt_1000_bf_scaffold_1070_8
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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7313..7783
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000381B690
Putative membrane protein {ECO:0000313|EMBL:CEA15765.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
CDP-alcohol phosphatidyltransferase
SCNpilot_expt_1000_bf_scaffold_1070_9
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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7815..8840
DNA (1026bp) protein (342aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
ABC transporter n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NLS0_ELIME rbh
ABC transporter; K02071 D-methionine transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1070_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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8833..9486
DNA (654bp) protein (218aa)
Methionine ABC transporter permease n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0Q1F5_ELIME rbh
DL-methionine transporter permease subunit {ECO:0000313|EMBL:KIC91300.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
binding-protein-dependent transport system inner membrane protein; K02072 D-methionine transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1070_11
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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9493..10296
DNA (804bp) protein (268aa)
Lipoprotein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2TB39_9FLAO rbh
Lipoprotein {ECO:0000256|PIRNR:PIRNR002854}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium formosense.;"
lipoprotein; K02073 D-methionine transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1070_12
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10361..12313)
DNA (1953bp) protein (651aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] rbh
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IK46_FLUTR rbh
PpiC-type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:AEA42945.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1070_13
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12323..13795)
DNA (1473bp) protein (491aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW26
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IK45_FLUTR rbh
SCNpilot_expt_1000_bf_scaffold_1070_14
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

14015..14665
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IK44_FLUTR
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1070_15
unknown

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14766..15035
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1070_16
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(15109..15708)
DNA (600bp) protein (200aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE33_FLUTR
ECF family RNA polymerase sigma subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:AEA45597.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1070_17
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15942..17327)
DNA (1386bp) protein (462aa)
Sodium:dicarboxylate symporter n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE36_FLUTR rbh
sodium:dicarboxylate symporter; K11102 proton glutamate symport protein rbh
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:AEA45600.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1070_18
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17517..18536
DNA (1020bp) protein (340aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
Transcription termination factor Rho n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE37_FLUTR
transcription termination factor Rho; K03628 transcription termination factor Rho
SCNpilot_expt_1000_bf_scaffold_1070_19
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18544..19242
DNA (699bp) protein (233aa)
Transcription termination factor Rho n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE37_FLUTR
transcription termination factor Rho; K03628 transcription termination factor Rho
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1070_20
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

19247..19804
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IE38_FLUTR
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_1000_bf_scaffold_1070_21
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

19817..21010
DNA (1194bp) protein (398aa)
Glycosyl transferase, group 1 family protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GXM3_FLAPJ rbh
Glycosyltransferase {ECO:0000313|EMBL:KFC24199.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
glycoside hydrolase family protein rbh
SCNpilot_expt_1000_bf_scaffold_1070_22
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21120..27116
DNA (5997bp) protein (1999aa)
Tetratricopeptide TPR_1 repeat-containing protein id=2664288 bin=GWF2_Bacteroidetes_38_335 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
hypothetical protein rbh
Tax=GWF2_Bacteroidetes_38_335_curated
SCNpilot_expt_1000_bf_scaffold_1070_23
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

27330..28997
DNA (1668bp) protein (556aa)
DNA mismatch repair protein MutL n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ID86_FLUTR rbh
DNA mismatch repair protein mutL; K03572 DNA mismatch repair protein MutL rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1070_24
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29002..29757
DNA (756bp) protein (252aa)
Rhomboid family protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ID87_FLUTR
Rhomboid family protein
Rhomboid family protein {ECO:0000313|EMBL:AEA45502.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1070_25
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29757..30644
DNA (888bp) protein (296aa)
Rhomboid family protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ID88_FLUTR
Rhomboid family protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1070_26
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

30644..31720
DNA (1077bp) protein (359aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ID89_FLUTR
Endonuclease/exonuclease/phosphatase
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1070_27
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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31791..32645
DNA (855bp) protein (285aa)
Restriction endonuclease n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RYL7_LEAB4 rbh
Restriction endonuclease {ECO:0000313|EMBL:KFC21008.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
restriction endonuclease rbh
SCNpilot_expt_1000_bf_scaffold_1070_28
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32951..34081
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2JGP2_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL67100.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein; K07504 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1070_29
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

34191..34913
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002E3DB2F
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
SCNpilot_expt_1000_bf_scaffold_1070_30
Elizabethkingia miricola, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(34941..35549)
DNA (609bp) protein (203aa)
phosphoribosyl-ATP pyrophosphohydrolase; K11755 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase [EC:3.6.1.31 3.5.4.19]
Histidine biosynthesis bifunctional protein HisIE n=2 Tax=Elizabethkingia anophelis RepID=H0KP67_9FLAO
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019}; TaxID=172045 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia miricola (Chryseobacterium miricola).;"
Displaying items 1-30 of 45 in total

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