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SCNpilot_expt_1000_bf_scaffold_1349

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1349_1
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3..1541
DNA (1539bp) protein (513aa)
Gingipain R (EC:3.4.22.37) rbh
Gingipain R {ECO:0000313|EMBL:AEA42020.1}; EC=3.4.22.37 {ECO:0000313|EMBL:AEA42020.1};; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
Gingipain R n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9M7_FLUTR rbh
SCNpilot_expt_1000_bf_scaffold_1349_2
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1531..2301
DNA (771bp) protein (257aa)
AMP nucleosidase; K01241 AMP nucleosidase [EC:3.2.2.4] rbh
AMP nucleosidase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICV1_FLUTR rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1349_3
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2290..3840)
DNA (1551bp) protein (517aa)
HI0933 family protein n=1 Tax=Krokinobacter sp. (strain 4H-3-7-5) RepID=F4B3C8_KROS4 rbh
hypothetical protein; K07137 rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1349_4
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3841..4557)
DNA (717bp) protein (239aa)
Probable protein-translocating porin PorT n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICA5_FLUTR
protein-translocating porin PorT
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1349_5
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4591..5319)
DNA (729bp) protein (243aa)
demethylmenaquinone methyltransferase (EC:2.1.1.-); K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] rbh
Demethylmenaquinone methyltransferase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICA4_FLUTR rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1349_6
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(5316..6275)
DNA (960bp) protein (320aa)
PfkB domain protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICA3_FLUTR rbh
PfkB domain-containing protein rbh
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_1000_bf_scaffold_1349_7
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(6318..7457)
DNA (1140bp) protein (380aa)
aspartate transaminase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
Aspartate transaminase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICA2_FLUTR rbh
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_1000_bf_scaffold_1349_8
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

7674..8303
DNA (630bp) protein (210aa)
TPR domain-containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9N2_FLUTR
TPR domain-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_1000_bf_scaffold_1349_9
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8312..8803
DNA (492bp) protein (164aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9N1_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1349_10
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

8808..10193
DNA (1386bp) protein (462aa)
phosphoglucosamine mutase; K01840 phosphomannomutase [EC:5.4.2.8] rbh
phosphoglucosamine mutase n=1 Tax=Aquimarina agarilytica RepID=UPI000288A489 rbh
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_1000_bf_scaffold_1349_11
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10241..11110
DNA (870bp) protein (290aa)
Ion transport protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S9K2_PEDSD
Ion transport protein
Ion transport protein {ECO:0000313|EMBL:ADY53555.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_1349_12
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

11168..11563
DNA (396bp) protein (132aa)
Large conductance mechanosensitive channel protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBM0_FLUTR
large conductance mechanosensitive channel protein; K03282 large conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000256|SAAS:SAAS00023935}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1349_13
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11748..12152)
DNA (405bp) protein (135aa)
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
arginyl-tRNA synthetase n=1 Tax=Prevotella maculosa RepID=UPI00035DA5C3
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_1349_14].
Tax=GWB2_Bacteroidetes_41_8_curated
SCNpilot_expt_1000_bf_scaffold_1349_14
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists


comp(12188..13657)
DNA (1470bp) protein (490aa)
arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] rbh
Arginine--tRNA ligase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFR7_FLUTR rbh
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_1000_bf_scaffold_1349_15
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13661..14620)
DNA (960bp) protein (320aa)
Arginase; K01476 arginase [EC:3.5.3.1] rbh
Arginase n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S7A9_9FLAO rbh
Arginase {ECO:0000313|EMBL:KGO97154.1}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
SCNpilot_expt_1000_bf_scaffold_1349_16
unknown

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14703..15329
DNA (627bp) protein (209aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1349_17
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15467..18088
DNA (2622bp) protein (874aa)
Cell division protein FtsK/SpoIIIE n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFR3_FLUTR rbh
cell division protein FtsK/SpoIIIE; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1349_18
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18085..18537
DNA (453bp) protein (151aa)
Restriction endonuclease, type I, EcoRI, R subunit/Type III n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EAA8_RUNSL
Restriction endonuclease, type I, EcoRI, R subunit/type III
Restriction endonuclease, type I, EcoRI, R subunit/Type III {ECO:0000313|EMBL:AEI47446.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_1349_19
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18560..19297)
DNA (738bp) protein (246aa)
Peptide chain release factor 3 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFS3_FLUTR
peptide chain release factor 3 (bRF-3); K02837 peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1349_20
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19417..20187)
DNA (771bp) protein (257aa)
Peptide chain release factor 3 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IFS3_FLUTR
peptide chain release factor 3 (bRF-3); K02837 peptide chain release factor 3
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1349_21
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21051..23279)
DNA (2229bp) protein (743aa)
Peptidase M48 Ste24p n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIE3_FLUTR rbh
peptidase M48 Ste24p rbh
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_1349_22
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23414..24367)
DNA (954bp) protein (318aa)
PKD domain containing protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2II01_FLUTR
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:AEA42701.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1349_23
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

24469..26703
DNA (2235bp) protein (745aa)
FG-GAP repeat protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IGK4_FLUTR rbh
FG-GAP repeat-containing protein rbh
FG-GAP repeat protein {ECO:0000313|EMBL:AEA42610.1}; Flags: Precursor;; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_1349_24
unknown

Not on your lists

26748..27044
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1349_25
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(26969..27733)
DNA (765bp) protein (255aa)
4-diphosphocytidyL-2-c-methyL-d-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JT42_9BACT
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_1000_bf_scaffold_1349_26
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

27836..28789
DNA (954bp) protein (318aa)
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IGK6_FLUTR rbh
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
SCNpilot_expt_1000_bf_scaffold_1349_27
Chryseobacterium antarcticum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28873..29574)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI000368BAEB rbh
ATP-binding domain-containing protein {ECO:0000313|EMBL:KEY18059.1}; TaxID=266748 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium antarcticum.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1349_28
Prevotella sp. oral taxon 317, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29615..30331)
DNA (717bp) protein (239aa)
CAAX amino terminal protease family protein n=1 Tax=Prevotella sp. oral taxon 317 str. F0108 RepID=D3IFK1_9BACT
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EFC68797.1}; TaxID=575615 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. oral taxon 317 str. F0108.;"
SCNpilot_expt_1000_bf_scaffold_1349_29
Flavobacterium indicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30378..30767)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XP84_FLAIG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG53158.1}; TaxID=1094466 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9).;"
SCNpilot_expt_1000_bf_scaffold_1349_30
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

comp(30836..31405)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6GZY0_FLAPJ rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
Displaying items 1-30 of 55 in total

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