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SCNpilot_expt_1000_bf_scaffold_487

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Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_487_1
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..548
DNA (546bp) protein (182aa)
Major facilitator transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX4_9GAMM
Major Facilitator Superfamily protein {ECO:0000313|EMBL:AJZ56350.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_487_2
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

923..1834
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM39474.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_expt_1000_bf_scaffold_487_3
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2374..4377
DNA (2004bp) protein (668aa)
Conjugal transfer coupling protein TraG n=1 Tax=Pseudomonas aeruginosa X13273 RepID=U8YUQ6_PSEAI rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:KGE69525.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_expt_1000_bf_scaffold_487_4
Pseudomonas monteilii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4374..4838
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8EGU1_PSEAI
CopG family transcripitonal regulator {ECO:0000313|EMBL:AHC89230.1}; TaxID=1435058 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas monteilii SB3101.;"
CopG domain-containing protein
SCNpilot_expt_1000_bf_scaffold_487_5
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4835..5857
DNA (1023bp) protein (341aa)
P-type conjugative transfer ATPase TrbB n=2 Tax=Burkholderia multivorans RepID=B9BUE4_9BURK rbh
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:EEE05441.1}; TaxID=513052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD2.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_expt_1000_bf_scaffold_487_6
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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5854..6237
DNA (384bp) protein (128aa)
Conjugal transfer protein TrbC n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CHG5_ALCDB
conjugal transfer protein Trbc
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AFT71066.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
SCNpilot_expt_1000_bf_scaffold_487_7
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6234..6503
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa CF614 RepID=U8BKL0_PSEAI
Conjugal transfer protein TrbD {ECO:0000313|EMBL:AKC78380.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
conjugal transfer protein; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_487_8
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6519..8981
DNA (2463bp) protein (821aa)
Conjugal transfer protein TrbE n=1 Tax=Pseudomonas aeruginosa VRFPA05 RepID=V4UXD4_PSEAI rbh
CagE, TrbE, VirB , component of type IV transporter system family protein {ECO:0000313|EMBL:KGC11472.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei (Pseudomonas mallei).;"
ATPase; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_expt_1000_bf_scaffold_487_9
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8978..9706
DNA (729bp) protein (243aa)
P-type conjugative transfer protein TrbJ n=3 Tax=Pseudomonas aeruginosa RepID=U8EGU6_PSEAI rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KGE69519.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
P-type conjugative transfer protein TrbJ rbh
SCNpilot_expt_1000_bf_scaffold_487_10
Pseudomonas monteilii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9718..10014
DNA (297bp) protein (99aa)
UPI0003D6881E related cluster n=1 Tax=unknown RepID=UPI0003D6881E
Uncharacterized protein {ECO:0000313|EMBL:AHC89224.1}; TaxID=1435058 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas monteilii SB3101.;"
lipoprotein
SCNpilot_expt_1000_bf_scaffold_487_11
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10011..11186
DNA (1176bp) protein (392aa)
P-type conjugative transfer protein TrbL n=1 Tax=Burkholderia pseudomallei MSHR346 RepID=C4KSG7_BURPE rbh
trbL; P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ACQ96415.1}; TaxID=536230 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR346.;"
SCNpilot_expt_1000_bf_scaffold_487_12
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11199..11903
DNA (705bp) protein (235aa)
Conjugal transfer protein TrbF n=3 Tax=Pseudomonas aeruginosa RepID=U8EG63_PSEAI rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KGE69516.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
SCNpilot_expt_1000_bf_scaffold_487_13
Burkholderia mallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11900..12889
DNA (990bp) protein (330aa)
Conjugative transfer protein TrbG n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3EZQ9_STEMA rbh
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:KGC11568.1}; TaxID=13373 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia mallei (Pseudomonas mallei).;"
TrbG-like protein rbh
SCNpilot_expt_1000_bf_scaffold_487_14
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12892..14184
DNA (1293bp) protein (431aa)
TrbI-like protein n=1 Tax=Pseudomonas aeruginosa X13273 RepID=U8YQL3_PSEAI rbh
Conjugal transfer protein TrbI {ECO:0000313|EMBL:KGE69514.1}; TaxID=1324332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
conjugation trbi family protein rbh
SCNpilot_expt_1000_bf_scaffold_487_15
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14181..14438
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ralstonia solanacearum SD54 RepID=V4ZPT8_RALSL
Conjugal transfer protein {ECO:0000313|EMBL:KGH09987.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_487_16
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15049..15954
DNA (906bp) protein (302aa)
cysM; cysteine synthase b; K12339 cysteine synthase B [EC:2.5.1.47]
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Cysteine synthase B n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCB8_ACIET
SCNpilot_expt_1000_bf_scaffold_487_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15960..16529
DNA (570bp) protein (190aa)
NUDIX hydrolase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCB7_ACIET
nudix hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ACM33822.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_1000_bf_scaffold_487_18
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16526..16753
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXC3_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94258.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_487_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16995..17819
DNA (825bp) protein (275aa)
UPI00039CB44C related cluster n=1 Tax=unknown RepID=UPI00039CB44C
Putative signal transduction protein {ECO:0000313|EMBL:GAD22132.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
signal transduction protein
SCNpilot_expt_1000_bf_scaffold_487_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17876..19675)
DNA (1800bp) protein (600aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Dihydrolipoamide dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U127_ALIDB
SCNpilot_expt_1000_bf_scaffold_487_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19688..21331)
DNA (1644bp) protein (548aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]
dihydrolipoamide acetyltransferase n=1 Tax=Acidovorax avenae RepID=UPI00031EB859
SCNpilot_expt_1000_bf_scaffold_487_22
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21347..22291)
DNA (945bp) protein (315aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
aceE; pyruvate dehydrogenase subunit E1; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7R9_ACISJ
SCNpilot_expt_1000_bf_scaffold_487_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22252..24027)
DNA (1776bp) protein (592aa)
aceE; pyruvate dehydrogenase subunit e1 (EC:1.2.4.1); K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIU9_ACIET
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_1000_bf_scaffold_487_24
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24192..26714
DNA (2523bp) protein (841aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIU8_ACIET rbh
pas/pac sensor signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_487_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26726..27355
DNA (630bp) protein (210aa)
LuxR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B5BEA
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:GAD24164.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LuxR family two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_487_26
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27427..28278
DNA (852bp) protein (284aa)
methylenetetrahydrofolate dehydrogenase (nadp(+)) (EC:1.5.1.5); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD n=2 Tax=Alicycliphilus denitrificans RepID=E8U122_ALIDB rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_1000_bf_scaffold_487_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28275..30344
DNA (2070bp) protein (690aa)
oligopeptidase A (EC:3.4.24.70); K01414 oligopeptidase A [EC:3.4.24.70]
oligopeptidase A n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F7B67
Zn-dependent oligopeptidases {ECO:0000313|EMBL:GAD24166.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_487_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30457..31137
DNA (681bp) protein (227aa)
Glutaredoxin n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7S4_ACISJ
glutaredoxin
Glutaredoxin {ECO:0000313|EMBL:GAD24167.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_487_29
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31398..32093)
DNA (696bp) protein (232aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
ribose 5-phosphate isomerase (EC:5.3.1.6); K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6]
Ribose-5-phosphate isomerase A n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X629_DELAC
SCNpilot_expt_1000_bf_scaffold_487_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32130..33182
DNA (1053bp) protein (351aa)
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Dihydroorotate dehydrogenase (quinone) n=2 Tax=Alicycliphilus denitrificans RepID=E8U118_ALIDB
Displaying items 1-30 of 64 in total

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