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SCNpilot_expt_1000_bf_scaffold_660

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Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_660_1
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..644)
DNA (642bp) protein (214aa)
ATP-dependent chaperone ClpB n=2 Tax=Alicycliphilus denitrificans RepID=E8TZG1_ALIDB
ATP-dependent chaperone clpb; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_1000_bf_scaffold_660_2
Burkholderia sp. JS667, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(844..1731)
DNA (888bp) protein (296aa)
LysR-type transcriptional regulator n=2 Tax=Burkholderiales RepID=C3UVE2_9BURK rbh
LysR-type transcriptional regulator {ECO:0000313|EMBL:ACO92653.1}; TaxID=622617 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. JS667.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_660_3
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1783..2787)
DNA (1005bp) protein (335aa)
Electron transfer protein n=1 Tax=Delftia tsuruhatensis RepID=Q58LY7_9BURK rbh
Electron transfer protein {ECO:0000313|EMBL:AAX47243.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
3-ketosteroid-9-alpha-hydroxylase reductase subunit
SCNpilot_expt_1000_bf_scaffold_660_4
Burkholderia sp. JS667, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2800..3468)
DNA (669bp) protein (223aa)
Aniline dioxygenase terminal oxygenase component (Beta subunit) n=1 Tax=Burkholderia sp. JS667 RepID=C3UVE4_9BURK rbh
Aniline dioxygenase terminal oxygenase component (Beta subunit) {ECO:0000313|EMBL:ACO92655.1}; TaxID=622617 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. JS667.;"
aromatic-ring-hydroxylating dioxygenase subunit beta
SCNpilot_expt_1000_bf_scaffold_660_5
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3465..4814)
DNA (1350bp) protein (450aa)
Large subunit of terminal dioxygenase n=1 Tax=Pseudomonas putida RepID=P95531_PSEPU rbh
Large subunit of terminal dioxygenase {ECO:0000313|EMBL:BAA12807.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
Rieske (2Fe-2S) domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_660_6
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4970..5695)
DNA (726bp) protein (242aa)
Amino group transfer protein n=1 Tax=Delftia tsuruhatensis RepID=Q58LZ0_9BURK rbh
Amino group transfer protein {ECO:0000313|EMBL:AAX47240.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_660_7
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5705..7183)
DNA (1479bp) protein (493aa)
L-glutamine synthetase (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2] rbh
Amino group transfer protein n=1 Tax=Delftia tsuruhatensis RepID=Q58LZ1_9BURK rbh
Amino group transfer protein {ECO:0000313|EMBL:AAX47239.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
SCNpilot_expt_1000_bf_scaffold_660_8
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(7739..8131)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QRE5_9RHIZ
hypothetical protein; K09706 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO32290.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
SCNpilot_expt_1000_bf_scaffold_660_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8164..8745)
DNA (582bp) protein (194aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JAS2_AGRRK
hypothetical protein; K03523 putative biotin biosynthesis protein BioY
Biotin biosynthesis protein BioY {ECO:0000313|EMBL:KEA05533.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_660_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8914..9891
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034A95DE
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin operon repressor {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
birA, biotin-(acetyl-CoA-carboxylase) ligase
SCNpilot_expt_1000_bf_scaffold_660_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9896..10384)
DNA (489bp) protein (163aa)
molybdopterin biosynthesis moae protein; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
molybdenum cofactor biosynthesis protein MoaE n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035CF262
Molybdopterin biosynthesis MoaE protein {ECO:0000313|EMBL:GAD24285.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_660_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10436..10690
DNA (255bp) protein (85aa)
UPI0003D40121 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D40121
Uncharacterized protein {ECO:0000313|EMBL:GAD24286.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_660_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10694..11020
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B132A
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_660_14
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11007..11267)
DNA (261bp) protein (87aa)
molybdenum cofactor biosynthesis protein MoaD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003601DE8
Molybdopterin converting factor, small subunit {ECO:0000313|EMBL:GAD24290.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
molybdopterin converting factor subunit 1; K03636 molybdopterin synthase sulfur carrier subunit
SCNpilot_expt_1000_bf_scaffold_660_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11264..12496)
DNA (1233bp) protein (411aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdenum cofactor synthesis domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDI2_ACIET
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:ACM33991.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_1000_bf_scaffold_660_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12493..13050)
DNA (558bp) protein (186aa)
molybdopterin-guanine dinucleotide biosynthesis protein B n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002375AF3
molybdopterin-guanine dinucleotide biosynthesis protein B; K03753 molybdopterin-guanine dinucleotide biosynthesis protein B
Molybdopterin-guanine dinucleotide biosynthesis protein B {ECO:0000313|EMBL:ABX37846.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_1000_bf_scaffold_660_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13115..14542)
DNA (1428bp) protein (476aa)
threonine synthase (EC:4.2.3.1) id=12552525 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_660_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14542..15876)
DNA (1335bp) protein (445aa)
homoserine dehydrogenase; K00003 homoserine dehydrogenase [EC:1.1.1.3] rbh
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
Homoserine dehydrogenase n=3 Tax=Comamonas testosteroni RepID=D0J1M3_COMT2 rbh
SCNpilot_expt_1000_bf_scaffold_660_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15917..17191)
DNA (1275bp) protein (425aa)
aminotransferase AlaT (EC:2.6.1.-); K14260 alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2] rbh
Aminotransferase {ECO:0000313|EMBL:ABM43330.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABM43330.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Aminotransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAQ5_ACISJ rbh
SCNpilot_expt_1000_bf_scaffold_660_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17277..17648
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000367F18C
hypothetical protein; K09008 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAD24296.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_660_21
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17814..18302
DNA (489bp) protein (163aa)
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=2 Tax=Acidovorax RepID=A1WAQ7_ACISJ
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ACM33997.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_1000_bf_scaffold_660_22
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18393..20051
DNA (1659bp) protein (553aa)
phosphate starvation protein PhoH n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036111A8
ATPase related to phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:GAD24298.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
phoh family protein; K07175 PhoH-like ATPase
SCNpilot_expt_1000_bf_scaffold_660_23
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20125..21657)
DNA (1533bp) protein (511aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
NAD-dependent aldehyde dehydrogenase n=1 Tax=Ralstonia pickettii OR214 RepID=R0CK61_RALPI rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:ENZ77126.1}; TaxID=1264675 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii OR214.;"
SCNpilot_expt_1000_bf_scaffold_660_24
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21677..23095)
DNA (1419bp) protein (473aa)
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12]
DNA helicase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003617FBF
Replicative DNA helicase {ECO:0000313|EMBL:GAD24304.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_660_25
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23297..23662
DNA (366bp) protein (122aa)
Cyclic diguanosine monophosphate-binding protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C0J3_9BURK
Cyclic diguanosine monophosphate-binding protein {ECO:0000256|PIRNR:PIRNR028141}; Short=c-di-GMP-binding protein {ECO:0000256|PIRNR:PIRNR028141};; Pilz domain-containing protein {ECO:0000256|PIRNR:PIRNR028141}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
type IV pilus assembly PilZ
SCNpilot_expt_1000_bf_scaffold_660_26
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(23717..24169)
DNA (453bp) protein (151aa)
50S ribosomal protein L9 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B02D0
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
rplI; 50S ribosomal protein l9; K02939 large subunit ribosomal protein L9
SCNpilot_expt_1000_bf_scaffold_660_27
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24184..24471)
DNA (288bp) protein (96aa)
30S ribosomal protein S18 n=4 Tax=Comamonadaceae RepID=RS18_ACIAC
ribosomal protein s18; K02963 small subunit ribosomal protein S18
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_660_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24484..24804)
DNA (321bp) protein (107aa)
Single-strand binding protein/Primosomal replication protein n n=2 Tax=Alicycliphilus denitrificans RepID=E8TYE7_ALIDB
single-strand binding protein/primosomal replication protein n; K02686 primosomal replication protein N
Primosomal replication protein n {ECO:0000256|SAAS:SAAS00194886}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_660_29
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(24830..25198)
DNA (369bp) protein (123aa)
30S ribosomal protein S6 n=2 Tax=Alicycliphilus denitrificans RepID=E8TYE8_ALIDB
ribosomal protein s6; K02990 small subunit ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000256|SAAS:SAAS00020539}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_1000_bf_scaffold_660_30
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25424..26041
DNA (618bp) protein (206aa)
Protein GrpE n=1 Tax=Acidovorax sp. (strain JS42) RepID=GRPE_ACISJ
heat shock protein GrpE; K03687 molecular chaperone GrpE
Protein GrpE {ECO:0000255|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000255|HAMAP-Rule:MF_01151}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Displaying items 1-30 of 63 in total

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