ggKbase home page

SCNpilot_expt_1000_bf_scaffold_673

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_673_1
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113..1078)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Smaragdicoccus niigatensis RepID=UPI0003643C95 rbh
2-nitropropane dioxygenase NPD
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
SCNpilot_expt_1000_bf_scaffold_673_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1593..1931)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0W9_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB35386.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_673_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2521..4689)
DNA (2169bp) protein (723aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HUI2_9BURK rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AFU44397.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
3-hydroxyacyl-CoA dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_673_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4704..5909)
DNA (1206bp) protein (402aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:AFU44398.1}; EC=2.3.1.9 {ECO:0000313|EMBL:AFU44398.1};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Acetyl-CoA acetyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HN12_9BURK
SCNpilot_expt_1000_bf_scaffold_673_5
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6011..6964)
DNA (954bp) protein (318aa)
acyl-CoA dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI0002375F61
acyl-CoA dehydrogenase-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_1000_bf_scaffold_673_6
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6971..7180)
DNA (210bp) protein (70aa)
acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BUM8_9BURK
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_673_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7293..8462)
DNA (1170bp) protein (390aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J3CUU9_9BURK
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL78974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ABC transporter, branched-chain amino acid-binding protein
SCNpilot_expt_1000_bf_scaffold_673_8
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8521..10392)
DNA (1872bp) protein (624aa)
fatty-acid--CoA ligase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B2ADE
AMP-forming long-chain acyl-CoA synthetase {ECO:0000313|EMBL:EJE48391.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_673_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10397..11188)
DNA (792bp) protein (264aa)
ABC transporter-like protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HN17_9BURK
ABC transporter-like protein
ABC transporter-like protein {ECO:0000313|EMBL:AFU44403.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_673_10
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11185..12024)
DNA (840bp) protein (280aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Acidovorax sp. CF316 RepID=J1E7T5_9BURK rbh
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJE48389.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ABC transporter-like protein
SCNpilot_expt_1000_bf_scaffold_673_11
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12021..13097)
DNA (1077bp) protein (359aa)
Inner-membrane translocator n=1 Tax=Acidovorax sp. KKS102 RepID=K0HX46_9BURK
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AFU44405.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_673_12
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13107..14036)
DNA (930bp) protein (310aa)
Inner-membrane translocator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I651_9BURK
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AFU44406.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_673_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14127..14540)
DNA (414bp) protein (138aa)
thioesterase superfamily protein; K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
thioesterase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003697BDA
Acyl-CoA hydrolase {ECO:0000313|EMBL:GAD20324.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_673_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14599..15558)
DNA (960bp) protein (320aa)
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 id=12553496 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_673_15
unknown

Not on your lists

15559..15741
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_673_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15795..15953
DNA (159bp) protein (53aa)
hypothetical protein id=12553495 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_673_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15967..16506
DNA (540bp) protein (180aa)
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit II n=2 Tax=Alicycliphilus denitrificans RepID=E8TQG9_ALIDB
Cytochrome c oxidase subunit II {ECO:0000313|EMBL:GAO24875.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_1000_bf_scaffold_673_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16522..18222
DNA (1701bp) protein (567aa)
Cytochrome c oxidase chain I {ECO:0000313|EMBL:CDM22946.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDM22946.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cytochrome-c oxidase (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome-c oxidase n=2 Tax=Alicycliphilus denitrificans RepID=E8TQH0_ALIDB
SCNpilot_expt_1000_bf_scaffold_673_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18255..19157
DNA (903bp) protein (301aa)
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] rbh
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Protoheme IX farnesyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GFZ2_ALIDK rbh
SCNpilot_expt_1000_bf_scaffold_673_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19169..20032
DNA (864bp) protein (288aa)
Redoxin domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TQH2_ALIDB rbh
electron transport protein SCO1/SenC; K07152 rbh
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:AEB86227.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_673_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20128..21627
DNA (1500bp) protein (500aa)
Methyl-viologen-reducing hydrogenase delta subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GFZ0_ALIDK rbh
methyl-viologen-reducing hydrogenase subunit delta rbh
Methyl-viologen-reducing hydrogenase delta subunit {ECO:0000313|EMBL:AEB86226.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_673_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21624..22127
DNA (504bp) protein (168aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TQH4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01329.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_673_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22145..23557
DNA (1413bp) protein (471aa)
Putative cytochrome c oxidase, subunit I n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQH5_ALIDB rbh
cytochrome c oxidase, subunit i rbh
Putative cytochrome c oxidase, subunit I {ECO:0000313|EMBL:AEB86224.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_673_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23571..25499
DNA (1929bp) protein (643aa)
Oxidoreductase FAD-binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TQH6_ALIDB
oxidoreductase fad-binding domain protein
Ferredoxin-NAD(+) reductase {ECO:0000313|EMBL:GAO24882.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_1000_bf_scaffold_673_25
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25620..27443
DNA (1824bp) protein (608aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44); K06147 ATP-binding cassette, subfamily B, bacterial
Xenobiotic-transporting ATPase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5G7_ALIDK
Metal ABC transporter permease {ECO:0000313|EMBL:KJA12010.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
SCNpilot_expt_1000_bf_scaffold_673_26
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27525..28508)
DNA (984bp) protein (328aa)
transketolase; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D9E05 rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit {ECO:0000313|EMBL:GAD20326.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_673_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28505..29512)
DNA (1008bp) protein (336aa)
pyruvate dehydrogenase (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
UPI0003A91002 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003A91002 rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit {ECO:0000313|EMBL:GAD20327.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_673_28
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29634..30671)
DNA (1038bp) protein (346aa)
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family n=1 Tax=Acidovorax sp. CF316 RepID=J0U3V6_9BURK
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family {ECO:0000313|EMBL:EJE50817.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
TRAP dicarboxylate transporter subunit DctP
SCNpilot_expt_1000_bf_scaffold_673_29
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30704..32002)
DNA (1299bp) protein (433aa)
TRAP dicarboxylate transporter DctM subunit n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RX26_COMTE
TRAP dicarboxylate transporter subunit DctM
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_673_30
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31999..32553)
DNA (555bp) protein (185aa)
C4-dicarboxylate ABC transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036593F0
TRAP dicarboxylate transporter subunit DctQ {ECO:0000313|EMBL:GAO20610.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
TRAP dicarboxylate transporter subunit DctQ
Displaying items 1-30 of 75 in total

View Taxonomy