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SCNpilot_expt_1000_bf_scaffold_968

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_968_1
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33..941)
DNA (909bp) protein (303aa)
Tyrosine recombinase XerD n=1 Tax=Acidovorax sp. CF316 RepID=J0K5X6_9BURK
tyrosine recombinase XerD; K04763 integrase/recombinase XerD
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_expt_1000_bf_scaffold_968_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1060..2016
DNA (957bp) protein (319aa)
TRAP transporter solute receptor, TAXI family n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK85_9BURK
TRAP transporter solute receptor, TAXI family {ECO:0000313|EMBL:EIK89625.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
TRAP transporter solute receptor TAXI family protein; K07080
SCNpilot_expt_1000_bf_scaffold_968_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2075..4114
DNA (2040bp) protein (680aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK86_9BURK rbh
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:EIK89626.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_968_4
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4114..4512
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK87_9BURK
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_1000_bf_scaffold_968_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4509..5414
DNA (906bp) protein (302aa)
Auxin Efflux Carrier n=2 Tax=Alicycliphilus denitrificans RepID=E8U236_ALIDB
auxin efflux carrier; K07088
Auxin Efflux Carrier {ECO:0000313|EMBL:ADU98840.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_968_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5448..6530)
DNA (1083bp) protein (361aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Epoxyqueuosine reductase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEP2_ACIET
putative electron transport protein yjeS-like
SCNpilot_expt_1000_bf_scaffold_968_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6546..7049
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WR01_COMTE
Peroxisome biogenesis factor 1 {ECO:0000313|EMBL:AIJ45376.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
peroxisome biogenesis factor 1; K06925 UPF0079 ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_968_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7034..8452
DNA (1419bp) protein (473aa)
cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
Cell wall hydrolase/autolysin n=2 Tax=Alicycliphilus denitrificans RepID=E8U234_ALIDB
Cell wall hydrolase/autolysin {ECO:0000313|EMBL:AEB86356.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_968_9
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8477..9382)
DNA (906bp) protein (302aa)
AraC family transcriptional regulator n=1 Tax=Comamonas sp. B-9 RepID=UPI0003958CD2 rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:KIH84043.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
AraC family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_968_10
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9466..10218
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KJH7_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_expt_1000_bf_scaffold_968_11
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10268..10801
DNA (534bp) protein (178aa)
Uncharacterized protein n=2 Tax=Acinetobacter guillouiae RepID=N8TP60_ACIGI
Macrophage infectivity potentiator-related protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_expt_1000_bf_scaffold_968_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10913..11251
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003760733
cupin 2 domain-containing protein
Cupin 2, conserved barrel domain protein {ECO:0000313|EMBL:ABM41222.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_968_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11454..11909
DNA (456bp) protein (152aa)
AsnC family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000360A361
transcription regulator asnc-type-like protein; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
AsnC family transcriptional regulator {ECO:0000313|EMBL:GAD24925.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_968_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12020..13639
DNA (1620bp) protein (540aa)
xanthine dehydrogenase, small subunit (EC:1.17.3.2); K13481 xanthine dehydrogenase small subunit [EC:1.17.1.4] rbh
Xanthine dehydrogenase, small subunit {ECO:0000313|EMBL:AEB86354.1}; EC=1.17.3.2 {ECO:0000313|EMBL:AEB86354.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Xanthine dehydrogenase, small subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4D8_ALIDK rbh
SCNpilot_expt_1000_bf_scaffold_968_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13651..16080
DNA (2430bp) protein (810aa)
xanthine dehydrogenase, molybdopterin binding subunit; K13482 xanthine dehydrogenase large subunit [EC:1.17.1.4] rbh
Xanthine dehydrogenase, molybdopterin binding subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1N1_ALIDB rbh
Xanthine dehydrogenase, molybdopterin binding subunit {ECO:0000313|EMBL:ADU98835.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_968_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16102..17070
DNA (969bp) protein (323aa)
Regulatory protein LysR n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1N0_ALIDB rbh
LysR family transcriptional regulator rbh
Regulatory protein LysR {ECO:0000313|EMBL:ADU98834.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_968_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17109..18401
DNA (1293bp) protein (431aa)
Xanthine/uracil/vitamin C permease n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1M9_ALIDB rbh
xanthine/uracil/vitamin c permease; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease rbh
Xanthine/uracil/vitamin C permease {ECO:0000313|EMBL:ADU98833.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_968_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18567..19841
DNA (1275bp) protein (425aa)
guanine deaminase; K01487 guanine deaminase [EC:3.5.4.3] rbh
Guanine deaminase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1M8_ALIDB rbh
Guanine deaminase {ECO:0000313|EMBL:ADU98832.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_968_19
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19901..20461)
DNA (561bp) protein (187aa)
Topoisomerase-associated Zn-finger domain protein n=1 Tax=gamma proteobacterium BDW918 RepID=I2JI34_9GAMM
Topoisomerase-associated Zn-finger domain protein {ECO:0000313|EMBL:EIF42636.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
topoisomerase-associated Zn-finger domain protein
SCNpilot_expt_1000_bf_scaffold_968_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20492..21139)
DNA (648bp) protein (216aa)
SNARE associated Golgi protein-like protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1M7_ALIDB
snare associated golgi protein-like protein; K03975 membrane-associated protein
SNARE associated Golgi protein-like protein {ECO:0000313|EMBL:AEB86349.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_968_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21190..23088
DNA (1899bp) protein (633aa)
DNA mismatch repair protein MutL n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4D1_ALIDK
DNA mismatch repair protein mutL; K03572 DNA mismatch repair protein MutL
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_968_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23254..24600
DNA (1347bp) protein (449aa)
glutamate dehydrogenase (nadp(+)) (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] id=12550979 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
glutamate dehydrogenase (nadp(+)) (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_expt_1000_bf_scaffold_968_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24641..25297)
DNA (657bp) protein (219aa)
UPI00039F57B1 related cluster n=1 Tax=unknown RepID=UPI00039F57B1
Uncharacterized protein {ECO:0000313|EMBL:GAD20744.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_968_24
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25316..27100
DNA (1785bp) protein (595aa)
ABC transporter related protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4N8_ACISJ rbh
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial rbh
ABC transporter related protein {ECO:0000313|EMBL:ABM41213.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_968_25
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27090..28982)
DNA (1893bp) protein (631aa)
Periplasmic/7TM domain sensor diguanylate cyclase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IUF7_9GAMM
Periplasmic/7TM domain sensor diguanylate cyclase {ECO:0000313|EMBL:EGW21567.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_968_26
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28994..29647)
DNA (654bp) protein (218aa)
Prolyl 4-hydroxylase subunit alpha-like protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S9Y3_9BURK
Prolyl 4-hydroxylase subunit alpha-like protein {ECO:0000313|EMBL:EHP40668.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
Prolyl 4-hydroxylase subunit alpha-like protein; K07394 SM-20-related protein
SCNpilot_expt_1000_bf_scaffold_968_27
unknown

Not on your lists

comp(29660..29887)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_968_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30211..31641)
DNA (1431bp) protein (477aa)
Tyrosine phenol-lyase {ECO:0000256|HAMAP-Rule:MF_00543}; EC=4.1.99.2 {ECO:0000256|HAMAP-Rule:MF_00543};; Beta-tyrosinase {ECO:0000256|HAMAP-Rule:MF_00543}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Tyrosine phenol-lyase n=1 Tax=Desulfovibrio sp. A2 RepID=G2H953_9DELT
tpl; tyrosine phenol-lyase rbh
SCNpilot_expt_1000_bf_scaffold_968_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31824..33194)
DNA (1371bp) protein (457aa)
tryptophanase (EC:4.1.99.1); K01667 tryptophanase [EC:4.1.99.1] rbh
Tryptophanase {ECO:0000313|EMBL:ADV00851.1}; EC=4.1.99.1 {ECO:0000313|EMBL:ADV00851.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Tryptophanase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TYF3_ALIDB rbh
SCNpilot_expt_1000_bf_scaffold_968_30
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33353..34717
DNA (1365bp) protein (455aa)
beta-Casp domain-containing protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000379254C rbh
Predicted exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:GAD24318.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
beta-Casp domain-containing protein; K07576 metallo-beta-lactamase family protein rbh
Displaying items 1-30 of 51 in total

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