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SCNpilot_expt_1000_bf_scaffold_1051

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1051_1
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..133)
DNA (132bp) protein (44aa)
tuf1; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
Elongation factor Tu n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DJA2_9BURK
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_expt_1000_bf_scaffold_1051_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(301..2409)
DNA (2109bp) protein (703aa)
Elongation factor G n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH4_ALIDB rbh
translation elongation factor G; K02355 elongation factor G rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_1051_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2496..2969)
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F7CDC rbh
30S ribosomal protein S7-like rbh
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_1051_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3126..3503)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=8 Tax=cellular organisms RepID=RS12_ACIET
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
SCNpilot_expt_1000_bf_scaffold_1051_5
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3770..4582
DNA (813bp) protein (271aa)
Heme exporter protein CcmC n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9Q6_NITMU
heme exporter protein CcmC; K02195 heme exporter protein C
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_1051_6
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4579..4719
DNA (141bp) protein (47aa)
Tax=CG_Rhodof_02
SCNpilot_expt_1000_bf_scaffold_1051_7
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4723..5184
DNA (462bp) protein (154aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEY0_NITSI
Cytochrome c-type biogenesis protein ccmE; K02197 cytochrome c-type biogenesis protein CcmE
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Flags: Precursor;; TaxID=261292 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
SCNpilot_expt_1000_bf_scaffold_1051_8
Nitrosomonas communis, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5181..7202
DNA (2022bp) protein (674aa)
Cytochrome c heme lyase subunit CcmF n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI48_9PROT
Cytochrome C biogenesis protein {ECO:0000313|EMBL:AKH38251.1}; TaxID=44574 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas communis.;"
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF
SCNpilot_expt_1000_bf_scaffold_1051_9
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7199..7726
DNA (528bp) protein (176aa)
Periplasmic protein thiol:disulfide oxidoreductase, DsbE subfamily n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK54_9BURK
periplasmic protein thiol--disulfide oxidoreductase DsbE; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_1000_bf_scaffold_1051_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7719..8192
DNA (474bp) protein (158aa)
Cytochrome c-type biogenesis protein CcmH n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRB7_RUBGI
ccmH; cytochrome c-type biogenesis protein CcmH; K02200 cytochrome c-type biogenesis protein CcmH
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_1051_11
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8192..9415
DNA (1224bp) protein (408aa)
Cytochrome c-type biogenesis protein CcmI n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CST3_SIDLE
Cytochrome C-type biogenesis protein CcmI; K02200 cytochrome c-type biogenesis protein CcmH
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_expt_1000_bf_scaffold_1051_12
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9415..10095
DNA (681bp) protein (227aa)
heme exporter protein CcmA (EC:3.6.3.41); K02193 heme exporter protein A [EC:3.6.3.41]
Heme exporter protein CcmA n=1 Tax=Marichromatium purpuratum 984 RepID=F9TWV7_MARPU
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_expt_1000_bf_scaffold_1051_13
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10092..10802
DNA (711bp) protein (237aa)
Heme exporter protein B n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QKW5_AZOSU
heme exporter protein CcmB; K02194 heme exporter protein B
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1051_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10872..12035)
DNA (1164bp) protein (388aa)
penicillin-binding protein 6 (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Penicillin-binding protein 6 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2Q1_ACISJ
Penicillin-binding protein 6 {ECO:0000313|EMBL:ABM40526.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1051_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12115..12744)
DNA (630bp) protein (210aa)
Putative transmembrane protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVH0_ALIDB
transmembrane protein; K07018
Putative transmembrane protein {ECO:0000313|EMBL:AEB82776.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_1051_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12808..13155)
DNA (348bp) protein (116aa)
Ferredoxin-like protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG9_ALIDB
ferredoxin-like protein
Ferredoxin-like protein {ECO:0000313|EMBL:ADU98179.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_1051_17
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13174..13602)
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1W2P7_ACISJ
hypothetical protein; K08973 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ABM40522.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1051_18
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13895..16249)
DNA (2355bp) protein (785aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCY2_ACISJ
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_1051_19
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16329..17282)
DNA (954bp) protein (318aa)
Protein-export membrane protein SecF n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHS2_ACIET
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_expt_1000_bf_scaffold_1051_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17300..19201)
DNA (1902bp) protein (634aa)
preprotein translocase subunit SecD n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003698377 rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
protein-export membrane protein secd; K03072 preprotein translocase subunit SecD rbh
SCNpilot_expt_1000_bf_scaffold_1051_21
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19251..19586)
DNA (336bp) protein (112aa)
Preprotein translocase, YajC subunit n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8N6_ACIDE
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EER59160.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
preprotein translocase subunit YajC
SCNpilot_expt_1000_bf_scaffold_1051_22
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19758..21443)
DNA (1686bp) protein (562aa)
indolepyruvate ferredoxin oxidoreductase (EC:1.2.7.8); K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
Pyruvate ferredoxin/flavodoxin oxidoreductase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCY7_ACISJ
Pyruvate ferredoxin/flavodoxin oxidoreductase {ECO:0000313|EMBL:ABM44112.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Displaying 22 items

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