ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1274

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1274_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140..514
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI00036E5609
Restriction endonuclease S subunits {ECO:0000313|EMBL:GAD22621.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
restriction modification system DNA specificity subunit
SCNpilot_expt_1000_bf_scaffold_1274_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

526..1044
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Escherichia coli UMEA 3318-1 RepID=T9JRZ1_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KGG83648.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
restriction modification system DNA specificity subunit
SCNpilot_expt_1000_bf_scaffold_1274_3
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1082..2296
DNA (1215bp) protein (405aa)
ATPase-like protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N941_9BURK rbh
Predicted ATPase AAA+ superfamily {ECO:0000313|EMBL:BAO80179.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
ATPase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_1274_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2293..5319
DNA (3027bp) protein (1009aa)
HsdR family type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
DEAD/DEAH box helicase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003697AA7
Type I site-specific restriction-modification system {ECO:0000313|EMBL:GAD22620.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCNpilot_expt_1000_bf_scaffold_1274_5
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5397..6710
DNA (1314bp) protein (438aa)
O-acetylhomoserine/o-acetylserine sulfhydrylase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I607_9BURK
o-acetylhomoserine/o-acetylserine sulfhydrylase
O-acetylhomoserine/o-acetylserine sulfhydrylase {ECO:0000313|EMBL:AFU47990.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1274_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6734..7699)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036192F6
Uncharacterized protein {ECO:0000313|EMBL:GAO44708.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
nad-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_1274_7
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7788..8669
DNA (882bp) protein (294aa)
Transcriptional regulator n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUM1_9BURK
LysR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_1000_bf_scaffold_1274_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8691..9758)
DNA (1068bp) protein (356aa)
C4-dicarboxylate transporter/malic acid transport protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0R9_ALIDB
c4-dicarboxylate transporter/malic acid transport protein
C4-dicarboxylate transporter/malic acid transport protein {ECO:0000313|EMBL:GAO24740.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_1000_bf_scaffold_1274_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9864..12224)
DNA (2361bp) protein (787aa)
ATP-dependent Clp protease, ATP-binding subunit clpA n=2 Tax=Alicycliphilus denitrificans RepID=E8TSQ6_ALIDB
ATP-dependent Clp protease, ATP-binding subunit clpA {ECO:0000313|EMBL:ADV00392.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
ATP-dependent Clp protease, ATP-binding subunit clpA; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
SCNpilot_expt_1000_bf_scaffold_1274_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12269..12625)
DNA (357bp) protein (119aa)
ATP-dependent Clp protease adaptor protein ClpS n=2 Tax=Acidovorax RepID=A1W6Z3_ACISJ
clpS; ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1274_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12751..16293)
DNA (3543bp) protein (1181aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
DNA polymerase iii, alpha subunit (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] rbh
DNA polymerase III, alpha subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TSQ8_ALIDB rbh
SCNpilot_expt_1000_bf_scaffold_1274_12
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16344..16943)
DNA (600bp) protein (200aa)
Undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000313|EMBL:CBJ36469.1}; EC=3.6.1.27 {ECO:0000313|EMBL:CBJ36469.1};; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
Undecaprenyl-diphosphatase n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8N4F9_RALSL
SCNpilot_expt_1000_bf_scaffold_1274_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17118..17915
DNA (798bp) protein (266aa)
Outer membrane protein assembly factor BamD n=2 Tax=Acidovorax RepID=A1W6Z1_ACISJ
hypothetical protein; K05807 putative lipoprotein
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1274_14
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17925..18587
DNA (663bp) protein (221aa)
Protein serine/threonine phosphatase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HY84_9BURK
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KJA09121.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
protein serine/threonine phosphatase
SCNpilot_expt_1000_bf_scaffold_1274_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18721..19803)
DNA (1083bp) protein (361aa)
AFG1-family ATPase n=2 Tax=Alicycliphilus denitrificans RepID=E8TTC5_ALIDB
AFG1 family ATPase; K06916
ATPase protein {ECO:0000313|EMBL:GAO22867.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_1000_bf_scaffold_1274_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19892..21319)
DNA (1428bp) protein (476aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
dihydrolipoamide dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003757BA1
SCNpilot_expt_1000_bf_scaffold_1274_17
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21390..22616)
DNA (1227bp) protein (409aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
2-oxoglutarate dehydrogenase E2; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BXI4_9BURK
SCNpilot_expt_1000_bf_scaffold_1274_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22702..25581)
DNA (2880bp) protein (960aa)
2-oxoglutarate dehydrogenase E1 (EC:1.2.4.2); K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] rbh
2-oxoglutarate dehydrogenase, E1 subunit {ECO:0000313|EMBL:AEB85373.1}; EC=1.2.4.2 {ECO:0000313|EMBL:AEB85373.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
2-oxoglutarate dehydrogenase, E1 subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TTC8_ALIDB rbh
SCNpilot_expt_1000_bf_scaffold_1274_19

Not on your lists

25907..26947
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00036EE38D
Lipoprotein {ECO:0000313|EMBL:EQD47596.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1274_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27096..28163
DNA (1068bp) protein (356aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTC9_ALIDB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV00403.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_1274_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28253..29119
DNA (867bp) protein (289aa)
universal stress protein UspA n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B6DD9 rbh
Universal stress protein UspA and related nucleotide-binding proteins {ECO:0000313|EMBL:GAD24032.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
UspA domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_1274_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29134..30759)
DNA (1626bp) protein (542aa)
ABC transporter related protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTD5_ALIDB rbh
ABC transporter; K13896 microcin C transport system ATP-binding protein rbh
ABC transporter related protein {ECO:0000313|EMBL:ADV00409.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_1274_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30759..31802)
DNA (1044bp) protein (348aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTD6_ALIDB
binding-protein-dependent transport systems inner membrane component; K13895 microcin C transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADV00410.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_1000_bf_scaffold_1274_24
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31882..32829)
DNA (948bp) protein (316aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0Y0_9BURK
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AFU46672.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_1000_bf_scaffold_1274_25
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32897..33838)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036F18FC
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA
Tax=BJP_IG2103_Rhodocyclales_63_50
SCNpilot_expt_1000_bf_scaffold_1274_26
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33872..35494
DNA (1623bp) protein (541aa)
NADH dehydrogenase subunit L; K05577 NAD(P)H-quinone oxidoreductase subunit 5 [EC:1.6.5.3] rbh
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036B126A rbh
Tax=BJP_IG2103_Rhodocyclales_63_50
SCNpilot_expt_1000_bf_scaffold_1274_27
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35511..38057
DNA (2547bp) protein (849aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036A9FDC rbh
hypothetical protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_1000_bf_scaffold_1274_28
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38075..40618)
DNA (2544bp) protein (848aa)
Type III restriction system endonuclease, putative n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2H8_ACISJ rbh
type III restriction system endonuclease rbh
Type III restriction system endonuclease, putative {ECO:0000313|EMBL:ABM40453.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_1000_bf_scaffold_1274_29
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40602..42200)
DNA (1599bp) protein (533aa)
restriction-modification system, putative endonuclease; K00571 site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] rbh
Restriction-modification system, predicted endonuclease-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y1K2_RAMTT rbh
Restriction-modification system, predicted endonuclease-like protein {ECO:0000313|EMBL:AEG91064.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_expt_1000_bf_scaffold_1274_30
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42197..42691)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036AF1A5
Uncharacterized protein {ECO:0000313|EMBL:GAD22284.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
Displaying items 1-30 of 40 in total

View Taxonomy