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SCNpilot_expt_1000_bf_scaffold_868

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_868_1
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(318..1028)
DNA (711bp) protein (237aa)
Two-component transcriptional regulator, winged helix family n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U4A2_9PROT
Putative two-component transcriptional regulator, winged helix family {ECO:0000313|EMBL:CDK99656.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
response regulator
SCNpilot_expt_1000_bf_scaffold_868_2
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1040..2602)
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036AC75F
Putative two component sensor kinase {ECO:0000313|EMBL:CDK99655.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
periplasmic sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_868_3
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3413..4942
DNA (1530bp) protein (510aa)
Membrane-bound lytic murein transglycosylase F {ECO:0000256|SAAS:SAAS00176609}; EC=4.-.-.- {ECO:0000256|SAAS:SAAS00276317};; EC=4.2.2.- {ECO:0000256|SAAS:SAAS00276308};; EC=4.2.2.n1 {ECO:0000256|SAAS:SAAS00166192};; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFL7_AZOSU rbh
putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_868_4
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4906..6189)
DNA (1284bp) protein (428aa)
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] rbh
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Serine--tRNA ligase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFL6_AZOSU rbh
SCNpilot_expt_1000_bf_scaffold_868_5
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6192..7517)
DNA (1326bp) protein (442aa)
AAA ATPase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFL4_AZOSU rbh
Replication-associated recombination protein A {ECO:0000313|EMBL:KFB75473.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
AAA ATPase; K07478 putative ATPase rbh
SCNpilot_expt_1000_bf_scaffold_868_6
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7524..8135)
DNA (612bp) protein (204aa)
Outer-membrane lipoprotein carrier protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ01_ACCPU rbh
outer membrane lipoprotein carrier protein LolA; K03634 outer membrane lipoprotein carrier protein rbh
Outer-membrane lipoprotein carrier protein {ECO:0000256|HAMAP-Rule:MF_00240, ECO:0000256|SAAS:SAAS00028972}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_868_7
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8135..10447)
DNA (2313bp) protein (771aa)
DNA segregation ATPase, FtsK/SpoIIIE family n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFL2_AZOSU rbh
DNA translocase FtsK {ECO:0000313|EMBL:EXI90307.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
DNA segregation ATPase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
SCNpilot_expt_1000_bf_scaffold_868_8
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10533..11207)
DNA (675bp) protein (225aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ03_ACCPU rbh
Crp/Fnr family transcriptional regulator; K10914 CRP/FNR family transcriptional regulator, cyclic AMP receptor protein rbh
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACV35589.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_868_9
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11359..12318
DNA (960bp) protein (320aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
Thioredoxin reductase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ04_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_868_10
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12382..12963
DNA (582bp) protein (194aa)
Putative DNA endonuclease SmrA {ECO:0000313|EMBL:KFB69235.1}; EC=3.1.-.- {ECO:0000313|EMBL:KFB69235.1};; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
Smr protein/MutS2 n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ05_ACCPU
Smr protein/MutS2
SCNpilot_expt_1000_bf_scaffold_868_11
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13293..14615
DNA (1323bp) protein (441aa)
Sodium:dicarboxylate symporter n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21SU1_RHOFD rbh
sodium:dicarboxylate symporter rbh
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:ABD71162.1}; Flags: Precursor;; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_expt_1000_bf_scaffold_868_12
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14657..15382
DNA (726bp) protein (242aa)
Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PVJ6_9RHOO
gltI; glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
Glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein {ECO:0000313|EMBL:BAL25344.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_868_13
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15642..15980)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein PII n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFK8_AZOSU
nitrogen regulatory protein PII; K04751 nitrogen regulatory protein P-II 1
Nitrogen regulatory protein PII {ECO:0000313|EMBL:AEV26074.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_868_14
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16048..17658)
DNA (1611bp) protein (537aa)
NAD synthetase (EC:6.3.5.1); K01950 NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] rbh
NAD+ synthetase {ECO:0000313|EMBL:ACV35593.1}; EC=6.3.5.1 {ECO:0000313|EMBL:ACV35593.1};; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
NAD+ synthetase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ07_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_868_15
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17751..18299)
DNA (549bp) protein (183aa)
Inorganic diphosphatase (EC:3.6.1.1); K01507 inorganic pyrophosphatase [EC:3.6.1.1] rbh
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
Inorganic pyrophosphatase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ08_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_868_16
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18458..18634
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H08_DECAR
hypothetical protein
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_1000_bf_scaffold_868_17
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18968..21223
DNA (2256bp) protein (752aa)
TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFK1_AZOSU rbh
TonB-dependent heme/hemoglobin receptor family protein/TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; K02014 iron complex outermembrane recepter protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_1000_bf_scaffold_868_18
unknown

Not on your lists

21287..21571
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_868_19
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21602..25585
DNA (3984bp) protein (1328aa)
Mg chelatase, cobalamin biosynthesis protein CobN; K02230 cobaltochelatase CobN [EC:6.6.1.2] rbh
Mg chelatase, cobalamin biosynthesis protein CobN n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFK0_AZOSU rbh
Mg chelatase, cobalamin biosynthesis protein CobN {ECO:0000313|EMBL:AEV26066.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_868_20
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25582..27849
DNA (2268bp) protein (756aa)
TonB-dependent receptor n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SCN4_GALCS rbh
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_1000_bf_scaffold_868_21
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27918..28439
DNA (522bp) protein (174aa)
Biopolymer transport protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFJ7_AZOSU
biopolymer transport protein
Biopolymer transport protein {ECO:0000313|EMBL:AEV26063.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_868_22
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28436..28789
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFJ6_AZOSU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV26062.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_868_23
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28786..29733
DNA (948bp) protein (316aa)
Putative uncharacterized protein phuW n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QPC4_METS6
phuW; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT51958.1}; Flags: Precursor;; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
SCNpilot_expt_1000_bf_scaffold_868_24
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


29754..30365
DNA (612bp) protein (204aa)
30S ribosomal protein S4 n=1 Tax=Thauera sp. 28 RepID=N6YDG3_9RHOO rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
SCNpilot_expt_1000_bf_scaffold_868_25
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30784..30990
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RKV2_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV33774.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_868_26
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31000..31581
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YWJ3_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO84319.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_868_27
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31578..32465
DNA (888bp) protein (296aa)
Iron dicitrate transporter FecR n=18 Tax=Pseudomonas RepID=R9ZAR0_PSEAI
iron dicitrate transporter FecR
Putative transmembrane sensor {ECO:0000313|EMBL:BAQ41013.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
SCNpilot_expt_1000_bf_scaffold_868_28
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32638..35064
DNA (2427bp) protein (809aa)
TonB-dependent ferric siderophore receptor n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SYI6_JANMA rbh
brfB; TonB-dependent ferric siderophore receptor; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent ferric siderophore receptor {ECO:0000313|EMBL:ABR91414.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_expt_1000_bf_scaffold_868_29
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35138..36421
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Herminiimonas arsenicoxydans RepID=A4G4V4_HERAR rbh
Uncharacterized protein {ECO:0000313|EMBL:CAL61541.2}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_868_30
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36405..37292)
DNA (888bp) protein (296aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFT4_AZOSU rbh
DMT(drug/metabolite transporter) superfamily permease rbh
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:AEV27197.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Displaying items 1-30 of 87 in total

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