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SCNpilot_expt_1000_bf_scaffold_2647

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2647_1
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..515)
DNA (513bp) protein (171aa)
Nitrite reductase {ECO:0000313|EMBL:EXI73901.1}; EC=1.7.2.1 {ECO:0000313|EMBL:EXI73901.1};; Flags: Precursor;; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
Hydroxylamine reductase (EC:1.7.99.1); K15864 nitrite reductase (NO-forming) / hydroxylamine reductase [EC:1.7.2.1 1.7.99.1]
Hydroxylamine reductase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RR96_ACCPU
SCNpilot_expt_1000_bf_scaffold_2647_2
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

722..1513
DNA (792bp) protein (264aa)
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] rbh
Uroporphyrin-III C-methyltransferase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RR97_ACCPU rbh
Siroheme synthase {ECO:0000313|EMBL:EXI86425.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
SCNpilot_expt_1000_bf_scaffold_2647_3
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1502..2401)
DNA (900bp) protein (300aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
1,4-dihydroxy-2-naphthoate octaprenyltransferase; K02548 1,4-dihydroxy-2-naphthoate octaprenyltransferase [EC:2.5.1.74 2.5.1.-] rbh
1,4-dihydroxy-2-naphthoate octaprenyltransferase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RR98_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_2647_4
unknown

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comp(2563..2952)
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2647_5
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3520..4578
DNA (1059bp) protein (353aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] rbh
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRA0_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_2647_6
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4568..5659
DNA (1092bp) protein (364aa)
tRNA-guanine transglycosylase, queuosine-34-forming; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] rbh
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Queuine tRNA-ribosyltransferase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJX4_AZOSU rbh
SCNpilot_expt_1000_bf_scaffold_2647_7
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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5698..6219
DNA (522bp) protein (174aa)
PAS domain S-box n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI53_AZOSU
PAS domain S-box
PAS domain S-box {ECO:0000313|EMBL:AEV27456.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_2647_8
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6963..7499
DNA (537bp) protein (179aa)
Methyl-accepting chemotaxis protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QI54_AZOSU
methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:AEV27457.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_2647_9
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7649..7915
DNA (267bp) protein (89aa)
Putative Preprotein translocase subunit YajC n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5R7F8_9RHOO
Preprotein translocase subunit YajC {ECO:0000313|EMBL:EXI89330.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
yajC; preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_expt_1000_bf_scaffold_2647_10
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7991..9880
DNA (1890bp) protein (630aa)
Protein translocase subunit SecD n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY1_ACCPU rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD rbh
SCNpilot_expt_1000_bf_scaffold_2647_11
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9893..10837
DNA (945bp) protein (315aa)
Protein-export membrane protein SecF n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY2_ACCPU rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF rbh
SCNpilot_expt_1000_bf_scaffold_2647_12
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10910..11524)
DNA (615bp) protein (205aa)
Transcriptional regulator n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHA4_AZOSU
transcriptional regulator; K03577 TetR/AcrR family transcriptional regulator, acrAB operon repressor
Transcriptional regulator {ECO:0000313|EMBL:AEV26249.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_2647_13
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11737..12966
DNA (1230bp) protein (410aa)
RND family efflux transporter, MFP subunit n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHA3_AZOSU rbh
RND family efflux transporter, MFP subunit; K03585 membrane fusion protein rbh
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AEV26248.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_2647_14
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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12979..16089
DNA (3111bp) protein (1037aa)
Hydrophobe/amphiphile efflux-1 HAE1 n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47E30_DECAR rbh
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_1000_bf_scaffold_2647_15
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16076..17539
DNA (1464bp) protein (488aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHA1_AZOSU rbh
NodT family efflux transporter outer membrane lipoprotein rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:AEV26246.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_2647_16

Not on your lists

comp(17633..17962)
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=uncultured prokaryote AT3 RepID=D3W8E4_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ACX33893.1}; TaxID=672202 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote AT3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2647_17
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17982..18299)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY6_ACCPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV35809.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_2647_18
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18300..19667)
DNA (1368bp) protein (456aa)
adenylosuccinate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2] rbh
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Adenylosuccinate lyase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJY2_AZOSU rbh
SCNpilot_expt_1000_bf_scaffold_2647_19
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19794..20402
DNA (609bp) protein (203aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase domain protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRY8_ACCPU rbh
Glutathione S-transferase domain protein {ECO:0000313|EMBL:ACV35811.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_2647_20
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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20576..21988
DNA (1413bp) protein (471aa)
Transcriptional regulator, GntR family n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H62_DECAR
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AAZ45819.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
SCNpilot_expt_1000_bf_scaffold_2647_21
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21983..22288)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H61_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ45820.1}; Flags: Precursor;; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
SCNpilot_expt_1000_bf_scaffold_2647_22
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22292..22939)
DNA (648bp) protein (216aa)
denitrification protein NorE; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] rbh
Putative denitrification protein NorE n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47H60_DECAR rbh
Tax=BJP_IG2103_Dechloromonas_63_51
SCNpilot_expt_1000_bf_scaffold_2647_23
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

Not on your lists

23223..23693
DNA (471bp) protein (157aa)
Two component histidine kinase, putative n=1 Tax=Ricinus communis RepID=B9TBS4_RICCO
two component histidine kinase, putative
Two component histidine kinase, putative {ECO:0000313|EMBL:EEF26689.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus.;" source="Ricinus communis (Castor bean).;"
SCNpilot_expt_1000_bf_scaffold_2647_24
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23734..25191
DNA (1458bp) protein (486aa)
Transcriptional regulator with HTH domain and aminotransferase domain n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QIC9_AZOSU
transcriptional regulator with HTH domain and aminotransferase domain
Transcriptional regulator with HTH domain and aminotransferase domain {ECO:0000313|EMBL:AEV25289.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_2647_25
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25405..25611)
DNA (207bp) protein (69aa)
Nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4]
Nitrous-oxide reductase {ECO:0000313|EMBL:EXI86230.1}; EC=1.7.2.4 {ECO:0000313|EMBL:EXI86230.1};; Flags: Precursor;; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
Nitrous-oxide reductase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RJ68_ACCPU
Displaying 25 items

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