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SCNpilot_expt_1000_bf_scaffold_1011

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1011_1
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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20..832
DNA (813bp) protein (271aa)
NADH-quinone oxidoreductase chain 3 {ECO:0000313|EMBL:KFB75154.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KFB75154.1};; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-02.;"
NADH dehydrogenase subunit G; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADH-quinone oxidoreductase, chain G n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL76_ACCPU
SCNpilot_expt_1000_bf_scaffold_1011_2
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

841..2343
DNA (1503bp) protein (501aa)
NADH-quinone oxidoreductase chain 3 {ECO:0000313|EMBL:EXI90506.1}; EC=1.6.99.5 {ECO:0000313|EMBL:EXI90506.1};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
NADH dehydrogenase subunit G; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADH-quinone oxidoreductase, chain G n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL76_ACCPU
SCNpilot_expt_1000_bf_scaffold_1011_3
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2340..3392
DNA (1053bp) protein (351aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
NADH-quinone oxidoreductase subunit H n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL75_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1011_4
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3403..3891
DNA (489bp) protein (163aa)
NADH dehydrogenase subunit I (EC:1.6.99.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
NADH-quinone oxidoreductase subunit I n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL74_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1011_5
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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3902..4504
DNA (603bp) protein (201aa)
NADH-quinone oxidoreductase subunit J {ECO:0000313|EMBL:KFB68677.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KFB68677.1};; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-01.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] rbh
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL73_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1011_6
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4574..4879
DNA (306bp) protein (102aa)
NADH-ubiquinone oxidoreductase chain 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
NADH-quinone oxidoreductase subunit K n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL72_ACCPU
SCNpilot_expt_1000_bf_scaffold_1011_7
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4886..6934
DNA (2049bp) protein (683aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] rbh
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHI1_AZOSU rbh
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_1000_bf_scaffold_1011_8
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6958..8442
DNA (1485bp) protein (495aa)
NADH dehydrogenase subunit M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] rbh
Proton-translocating NADH-quinone oxidoreductase, chain M {ECO:0000313|EMBL:ACV37019.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ACV37019.1};; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL70_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1011_9
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8455..9942
DNA (1488bp) protein (496aa)
NADH dehydrogenase subunit N (EC:1.6.99.5); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] rbh
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL69_ACCPU rbh
SCNpilot_expt_1000_bf_scaffold_1011_10
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10007..10567
DNA (561bp) protein (187aa)
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:KFB71020.1}; EC=3.6.1.13 {ECO:0000313|EMBL:KFB71020.1};; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
NUDIX hydrolase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13]
NUDIX hydrolase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RL68_ACCPU
SCNpilot_expt_1000_bf_scaffold_1011_11
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10571..10966)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI00037255D3
putative endonuclease containing a URI domain; K07461 putative endonuclease
Putative endonuclease containing a URI domain {ECO:0000313|EMBL:AEV26399.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1011_12
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10983..11882)
DNA (900bp) protein (300aa)
Recombination-associated protein RdgC n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVL7_ACCPU rbh
putative exonuclease RdgC; K03554 recombination associated protein RdgC rbh
Recombination-associated protein RdgC {ECO:0000256|HAMAP-Rule:MF_00194, ECO:0000256|SAAS:SAAS00073315}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1011_13
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12013..12483)
DNA (471bp) protein (157aa)
Ribonucleoside-diphosphate reductase NrdZ {ECO:0000313|EMBL:EXI85522.1}; EC=1.17.4.1 {ECO:0000313|EMBL:EXI85522.1};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPU6_ACCPU
SCNpilot_expt_1000_bf_scaffold_1011_14
Candidatus Accumulibacter sp. BA-91, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12802..15102
DNA (2301bp) protein (767aa)
Uncharacterized protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1GAQ6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KFB72702.1}; TaxID=1454002 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-91.;"
SCNpilot_expt_1000_bf_scaffold_1011_15
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15313..16161)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJN5_AZOSU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV26509.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1011_16
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16154..16798)
DNA (645bp) protein (215aa)
Flagellar motor protein n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJ90_AZOSU rbh
flagellar motor protein rbh
Flagellar motor protein {ECO:0000313|EMBL:AEV26508.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SCNpilot_expt_1000_bf_scaffold_1011_17
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16798..18726)
DNA (1929bp) protein (643aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RK91_ACCPU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACV33682.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1011_18
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18723..19565)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q4Q5_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL26968.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_1011_19
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19932..21293)
DNA (1362bp) protein (454aa)
Sensory box/GGDEF family protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KQ85_9BURK
Diguanylate phosphodiesterase {ECO:0000313|EMBL:EYC50386.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1011_20
unknown

Not on your lists

comp(21317..21769)
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1011_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21870..22763)
DNA (894bp) protein (298aa)
cheR2; protein CheR2 (EC:2.1.1.80); K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
Chemotaxis protein methyltransferase n=1 Tax=Pseudomonas fluorescens F113 RepID=G8QAF7_PSEFL
SCNpilot_expt_1000_bf_scaffold_1011_22
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22774..23328)
DNA (555bp) protein (185aa)
CheW protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RJ91_ACCPU
CheW protein; K03408 purine-binding chemotaxis protein CheW
CheW protein {ECO:0000313|EMBL:ACV36702.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_expt_1000_bf_scaffold_1011_23
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23338..25512)
DNA (2175bp) protein (725aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0AUQ4_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:EPZ16549.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
putative methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein rbh
SCNpilot_expt_1000_bf_scaffold_1011_24
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25540..27840)
DNA (2301bp) protein (767aa)
cheA1; putative chemotaxis protein histidine kinase (EC:2.7.13.1); K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
Putative chemotaxis protein histidine kinase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K2H0_AZOSB
SCNpilot_expt_1000_bf_scaffold_1011_25
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27854..28201)
DNA (348bp) protein (116aa)
Sulfate transporter/antisigma-factor antagonist STAS n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IVF8_9GAMM
anti-sigma-factor antagonist
Tax=GWA2_Gallionellales_60_18_curated
SCNpilot_expt_1000_bf_scaffold_1011_26

Not on your lists

comp(28233..28610)
DNA (378bp) protein (126aa)
chemotaxis protein CheY n=1 Tax=Methylomonas sp. MK1 RepID=UPI00035C4E7F
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:CBI11720.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
SCNpilot_expt_1000_bf_scaffold_1011_27
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28622..30115)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2IMT1_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ENA28712.1}; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. HPB0071.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1011_28
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30326..31072)
DNA (747bp) protein (249aa)
transcriptional regulator n=1 Tax=Burkholderia kururiensis RepID=UPI00034CC319
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADG19858.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_expt_1000_bf_scaffold_1011_29
BJP_IG2103_Dechloromonas_60_92, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31069..33354)
DNA (2286bp) protein (762aa)
Histidine kinase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QXK4_RALPI
two-component sensor
Tax=BJP_IG2103_Dechloromonas_60_92
SCNpilot_expt_1000_bf_scaffold_1011_30
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33652..34833)
DNA (1182bp) protein (394aa)
acetate kinase (EC:2.7.2.1); K00925 acetate kinase [EC:2.7.2.1] rbh
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas aromatica (strain RCB).;"
Acetate kinase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47HF1_DECAR rbh
Displaying items 1-30 of 51 in total

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